Cluster: WampachL_2018_SRR5575354_bin.4_CGC3
🧬 Cluster Details
- Gene Count: 7
- CAZyme Count: 1
- Substrate:
- Genome ID: WampachL_2018_SRR5575354_bin.4
- Continent: Europe
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | WampachL_2018_SRR5575354_bin.4_k141_3610 | WampachL_2018_SRR5575354_bin.4_k141_3610_7 | 7430 | 9829 | + | GT51 |
| TC | WampachL_2018_SRR5575354_bin.4_k141_3610 | WampachL_2018_SRR5575354_bin.4_k141_3610_8 | 10048 | 11952 | + | 2.A.108.2.10 |
| TC | WampachL_2018_SRR5575354_bin.4_k141_3610 | WampachL_2018_SRR5575354_bin.4_k141_3610_9 | 11981 | 12502 | + | 2.A.108.2.10 |
| pfam | WampachL_2018_SRR5575354_bin.4_k141_3610 | WampachL_2018_SRR5575354_bin.4_k141_3610_10 | 12618 | 14012 | + | YHS | FtrD-like |
| TC | WampachL_2018_SRR5575354_bin.4_k141_3610 | WampachL_2018_SRR5575354_bin.4_k141_3610_11 | 14012 | 15352 | + | 3.A.1.122.8 |
| pfam | WampachL_2018_SRR5575354_bin.4_k141_3610 | WampachL_2018_SRR5575354_bin.4_k141_3610_12 | 15339 | 16472 | + | FtsX | MacB_PCD |
| TC | WampachL_2018_SRR5575354_bin.4_k141_3610 | WampachL_2018_SRR5575354_bin.4_k141_3610_13 | 16474 | 17145 | + | 3.A.1.122.8 |
Gene ID: WampachL_2018_SRR5575354_bin.4_k141_3610_7
Type: CAZyme
Location: 7430 - 9829 (+)
Type: CAZyme
Location: 7430 - 9829 (+)
Gene ID: WampachL_2018_SRR5575354_bin.4_k141_3610_8
Type: TC
Location: 10048 - 11952 (+)
Type: TC
Location: 10048 - 11952 (+)
Gene ID: WampachL_2018_SRR5575354_bin.4_k141_3610_9
Type: TC
Location: 11981 - 12502 (+)
Type: TC
Location: 11981 - 12502 (+)
Gene ID: WampachL_2018_SRR5575354_bin.4_k141_3610_10
Type: pfam
Location: 12618 - 14012 (+)
Type: pfam
Location: 12618 - 14012 (+)
Gene ID: WampachL_2018_SRR5575354_bin.4_k141_3610_11
Type: TC
Location: 14012 - 15352 (+)
Type: TC
Location: 14012 - 15352 (+)
Gene ID: WampachL_2018_SRR5575354_bin.4_k141_3610_12
Type: pfam
Location: 15339 - 16472 (+)
Type: pfam
Location: 15339 - 16472 (+)
Gene ID: WampachL_2018_SRR5575354_bin.4_k141_3610_13
Type: TC
Location: 16474 - 17145 (+)
Type: TC
Location: 16474 - 17145 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Pasteurellaceae
Genus
Haemophilus_D
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| WampachL_2018_SRR5575354_bin.4_k141_3610_8 | vegetarian > vegan | 1.12963 | 0.02923 |
| WampachL_2018_SRR5575354_bin.4_k141_3610_10 | vegetarian > vegan | 1.79195 | 0.02923 |