Cluster: WampachL_2018_SRR5575354_bin.4_CGC20
🧬 Cluster Details
- Gene Count: 7
- CAZyme Count: 1
- Substrate:
- Genome ID: WampachL_2018_SRR5575354_bin.4
- Continent: Europe
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | WampachL_2018_SRR5575354_bin.4_k141_5826 | WampachL_2018_SRR5575354_bin.4_k141_5826_191 | 193468 | 195318 | + | 3.A.18.1.1 |
| CAZyme | WampachL_2018_SRR5575354_bin.4_k141_5826 | WampachL_2018_SRR5575354_bin.4_k141_5826_192 | 195414 | 196808 | + | GH23 |
| NULL(UNKNOWN) | WampachL_2018_SRR5575354_bin.4_k141_5826 | WampachL_2018_SRR5575354_bin.4_k141_5826_193 | 196864 | 197007 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| pfam | WampachL_2018_SRR5575354_bin.4_k141_5826 | WampachL_2018_SRR5575354_bin.4_k141_5826_194 | 197055 | 198017 | - | TbpB_B_D |
| TC | WampachL_2018_SRR5575354_bin.4_k141_5826 | WampachL_2018_SRR5575354_bin.4_k141_5826_195 | 198177 | 200477 | + | 1.B.14.2.1 |
| pfam | WampachL_2018_SRR5575354_bin.4_k141_5826 | WampachL_2018_SRR5575354_bin.4_k141_5826_196 | 200543 | 200866 | - | Ribosomal_S30AE |
| TC | WampachL_2018_SRR5575354_bin.4_k141_5826 | WampachL_2018_SRR5575354_bin.4_k141_5826_197 | 201108 | 202478 | - | 2.A.25.1.4 |
Gene ID: WampachL_2018_SRR5575354_bin.4_k141_5826_191
Type: TC
Location: 193468 - 195318 (+)
Type: TC
Location: 193468 - 195318 (+)
Gene ID: WampachL_2018_SRR5575354_bin.4_k141_5826_192
Type: CAZyme
Location: 195414 - 196808 (+)
Type: CAZyme
Location: 195414 - 196808 (+)
Gene ID: WampachL_2018_SRR5575354_bin.4_k141_5826_193
Type:
Location: 196864 - 197007 (+)
Type:
Location: 196864 - 197007 (+)
Gene ID: WampachL_2018_SRR5575354_bin.4_k141_5826_194
Type: pfam
Location: 197055 - 198017 (-)
Type: pfam
Location: 197055 - 198017 (-)
Gene ID: WampachL_2018_SRR5575354_bin.4_k141_5826_195
Type: TC
Location: 198177 - 200477 (+)
Type: TC
Location: 198177 - 200477 (+)
Gene ID: WampachL_2018_SRR5575354_bin.4_k141_5826_196
Type: pfam
Location: 200543 - 200866 (-)
Type: pfam
Location: 200543 - 200866 (-)
Gene ID: WampachL_2018_SRR5575354_bin.4_k141_5826_197
Type: TC
Location: 201108 - 202478 (-)
Type: TC
Location: 201108 - 202478 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Pasteurellaceae
Genus
Haemophilus_D
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| WampachL_2018_SRR5575354_bin.4_k141_5826_192 | vegetarian > omnivore | 1.58654 | 0.01162 |
| WampachL_2018_SRR5575354_bin.4_k141_5826_193 | vegetarian > omnivore | 1.93697 | 0.01162 |