Cluster: WampachL_2018_SRR5575354_bin.4_CGC2
🧬 Cluster Details
- Gene Count: 8
- CAZyme Count: 1
- Substrate:
- Genome ID: WampachL_2018_SRR5575354_bin.4
- Continent: Europe
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | WampachL_2018_SRR5575354_bin.4_k141_3011 | WampachL_2018_SRR5575354_bin.4_k141_3011_115 | 131911 | 133320 | + | 2.A.1.3.51 |
| TC | WampachL_2018_SRR5575354_bin.4_k141_3011 | WampachL_2018_SRR5575354_bin.4_k141_3011_116 | 133454 | 135100 | + | 3.A.1.5.27 |
| pfam | WampachL_2018_SRR5575354_bin.4_k141_3011 | WampachL_2018_SRR5575354_bin.4_k141_3011_117 | 135167 | 135799 | + | PNPOx_N | PNP_phzG_C | Pyridox_oxase_2 |
| CAZyme | WampachL_2018_SRR5575354_bin.4_k141_3011 | WampachL_2018_SRR5575354_bin.4_k141_3011_118 | 135875 | 136981 | - | GH177 |
| pfam | WampachL_2018_SRR5575354_bin.4_k141_3011 | WampachL_2018_SRR5575354_bin.4_k141_3011_119 | 136992 | 138065 | - | GFO_IDH_MocA | GFO_IDH_MocA_C | NAD_binding_3 | F420_oxidored | GFO_IDH_MocA_C3 |
| TF | WampachL_2018_SRR5575354_bin.4_k141_3011 | WampachL_2018_SRR5575354_bin.4_k141_3011_120 | 138055 | 138765 | - | GntR |
| TC | WampachL_2018_SRR5575354_bin.4_k141_3011 | WampachL_2018_SRR5575354_bin.4_k141_3011_121 | 138939 | 140165 | + | 2.A.1.12.1 |
| TC | WampachL_2018_SRR5575354_bin.4_k141_3011 | WampachL_2018_SRR5575354_bin.4_k141_3011_122 | 140321 | 141706 | + | 2.A.47.5.2 |
Gene ID: WampachL_2018_SRR5575354_bin.4_k141_3011_115
Type: TC
Location: 131911 - 133320 (+)
Type: TC
Location: 131911 - 133320 (+)
Gene ID: WampachL_2018_SRR5575354_bin.4_k141_3011_116
Type: TC
Location: 133454 - 135100 (+)
Type: TC
Location: 133454 - 135100 (+)
Gene ID: WampachL_2018_SRR5575354_bin.4_k141_3011_117
Type: pfam
Location: 135167 - 135799 (+)
Type: pfam
Location: 135167 - 135799 (+)
Gene ID: WampachL_2018_SRR5575354_bin.4_k141_3011_118
Type: CAZyme
Location: 135875 - 136981 (-)
Type: CAZyme
Location: 135875 - 136981 (-)
Gene ID: WampachL_2018_SRR5575354_bin.4_k141_3011_119
Type: pfam
Location: 136992 - 138065 (-)
Type: pfam
Location: 136992 - 138065 (-)
Gene ID: WampachL_2018_SRR5575354_bin.4_k141_3011_120
Type: TF
Location: 138055 - 138765 (-)
Type: TF
Location: 138055 - 138765 (-)
Gene ID: WampachL_2018_SRR5575354_bin.4_k141_3011_121
Type: TC
Location: 138939 - 140165 (+)
Type: TC
Location: 138939 - 140165 (+)
Gene ID: WampachL_2018_SRR5575354_bin.4_k141_3011_122
Type: TC
Location: 140321 - 141706 (+)
Type: TC
Location: 140321 - 141706 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Pasteurellaceae
Genus
Haemophilus_D
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| WampachL_2018_SRR5575354_bin.4_k141_3011_116 | vegan > omnivore | 1.10547 | 0.01786 |
| WampachL_2018_SRR5575354_bin.4_k141_3011_117 | vegetarian > omnivore | 1.13531 | 0.01162 |