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Cluster: WampachL_2018_SRR5575354_bin.4_CGC2

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC WampachL_2018_SRR5575354_bin.4_k141_3011 WampachL_2018_SRR5575354_bin.4_k141_3011_115 131911 133320 + 2.A.1.3.51
TC WampachL_2018_SRR5575354_bin.4_k141_3011 WampachL_2018_SRR5575354_bin.4_k141_3011_116 133454 135100 + 3.A.1.5.27
pfam WampachL_2018_SRR5575354_bin.4_k141_3011 WampachL_2018_SRR5575354_bin.4_k141_3011_117 135167 135799 + PNPOx_N | PNP_phzG_C | Pyridox_oxase_2
CAZyme WampachL_2018_SRR5575354_bin.4_k141_3011 WampachL_2018_SRR5575354_bin.4_k141_3011_118 135875 136981 - GH177
pfam WampachL_2018_SRR5575354_bin.4_k141_3011 WampachL_2018_SRR5575354_bin.4_k141_3011_119 136992 138065 - GFO_IDH_MocA | GFO_IDH_MocA_C | NAD_binding_3 | F420_oxidored | GFO_IDH_MocA_C3
TF WampachL_2018_SRR5575354_bin.4_k141_3011 WampachL_2018_SRR5575354_bin.4_k141_3011_120 138055 138765 - GntR
TC WampachL_2018_SRR5575354_bin.4_k141_3011 WampachL_2018_SRR5575354_bin.4_k141_3011_121 138939 140165 + 2.A.1.12.1
TC WampachL_2018_SRR5575354_bin.4_k141_3011 WampachL_2018_SRR5575354_bin.4_k141_3011_122 140321 141706 + 2.A.47.5.2
Gene ID: WampachL_2018_SRR5575354_bin.4_k141_3011_115
Type: TC
Location: 131911 - 133320 (+)
Gene ID: WampachL_2018_SRR5575354_bin.4_k141_3011_116
Type: TC
Location: 133454 - 135100 (+)
Gene ID: WampachL_2018_SRR5575354_bin.4_k141_3011_117
Type: pfam
Location: 135167 - 135799 (+)
Gene ID: WampachL_2018_SRR5575354_bin.4_k141_3011_118
Type: CAZyme
Location: 135875 - 136981 (-)
Gene ID: WampachL_2018_SRR5575354_bin.4_k141_3011_119
Type: pfam
Location: 136992 - 138065 (-)
Gene ID: WampachL_2018_SRR5575354_bin.4_k141_3011_120
Type: TF
Location: 138055 - 138765 (-)
Gene ID: WampachL_2018_SRR5575354_bin.4_k141_3011_121
Type: TC
Location: 138939 - 140165 (+)
Gene ID: WampachL_2018_SRR5575354_bin.4_k141_3011_122
Type: TC
Location: 140321 - 141706 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
WampachL_2018_SRR5575354_bin.4_k141_3011_116 vegan > omnivore 1.10547 0.01786
WampachL_2018_SRR5575354_bin.4_k141_3011_117 vegetarian > omnivore 1.13531 0.01162

🧭 Explore Read Mapping of CGC

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