Cluster: WampachL_2018_SRR5575354_bin.4_CGC18
🧬 Cluster Details
- Gene Count: 3
- CAZyme Count: 1
- Substrate:
- Genome ID: WampachL_2018_SRR5575354_bin.4
- Continent: Europe
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | WampachL_2018_SRR5575354_bin.4_k141_5416 | WampachL_2018_SRR5575354_bin.4_k141_5416_242 | 274318 | 275496 | - | 2.A.1.20.4 |
| pfam | WampachL_2018_SRR5575354_bin.4_k141_5416 | WampachL_2018_SRR5575354_bin.4_k141_5416_243 | 275560 | 276177 | - | Y_phosphatase | DSPc | Y_phosphatase2 | Y_phosphatase3 | PTP-NADK | Tc-R-P |
| CAZyme | WampachL_2018_SRR5575354_bin.4_k141_5416 | WampachL_2018_SRR5575354_bin.4_k141_5416_244 | 276187 | 277641 | - | GH32 |
Gene ID: WampachL_2018_SRR5575354_bin.4_k141_5416_242
Type: TC
Location: 274318 - 275496 (-)
Type: TC
Location: 274318 - 275496 (-)
Gene ID: WampachL_2018_SRR5575354_bin.4_k141_5416_243
Type: pfam
Location: 275560 - 276177 (-)
Type: pfam
Location: 275560 - 276177 (-)
Gene ID: WampachL_2018_SRR5575354_bin.4_k141_5416_244
Type: CAZyme
Location: 276187 - 277641 (-)
Type: CAZyme
Location: 276187 - 277641 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Pasteurellaceae
Genus
Haemophilus_D
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| WampachL_2018_SRR5575354_bin.4_k141_5416_244 | vegan > omnivore | 1.05607 | 0.01786 |