Cluster: WampachL_2018_SRR5575354_bin.4_CGC17
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 1
- Substrate:
- Genome ID: WampachL_2018_SRR5575354_bin.4
- Continent: Europe
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | WampachL_2018_SRR5575354_bin.4_k141_5416 | WampachL_2018_SRR5575354_bin.4_k141_5416_98 | 111689 | 112633 | + | 2.A.16.1.2 |
| TF | WampachL_2018_SRR5575354_bin.4_k141_5416 | WampachL_2018_SRR5575354_bin.4_k141_5416_99 | 112712 | 113425 | - | GntR |
| CAZyme | WampachL_2018_SRR5575354_bin.4_k141_5416 | WampachL_2018_SRR5575354_bin.4_k141_5416_100 | 113619 | 117392 | + | GH77 | GT35 |
| pfam | WampachL_2018_SRR5575354_bin.4_k141_5416 | WampachL_2018_SRR5575354_bin.4_k141_5416_101 | 117402 | 118193 | + | Exo_endo_phos |
| TC | WampachL_2018_SRR5575354_bin.4_k141_5416 | WampachL_2018_SRR5575354_bin.4_k141_5416_102 | 118204 | 119868 | + | 4.A.1.1.11 |
Gene ID: WampachL_2018_SRR5575354_bin.4_k141_5416_98
Type: TC
Location: 111689 - 112633 (+)
Type: TC
Location: 111689 - 112633 (+)
Gene ID: WampachL_2018_SRR5575354_bin.4_k141_5416_99
Type: TF
Location: 112712 - 113425 (-)
Type: TF
Location: 112712 - 113425 (-)
Gene ID: WampachL_2018_SRR5575354_bin.4_k141_5416_100
Type: CAZyme
Location: 113619 - 117392 (+)
Type: CAZyme
Location: 113619 - 117392 (+)
Gene ID: WampachL_2018_SRR5575354_bin.4_k141_5416_101
Type: pfam
Location: 117402 - 118193 (+)
Type: pfam
Location: 117402 - 118193 (+)
Gene ID: WampachL_2018_SRR5575354_bin.4_k141_5416_102
Type: TC
Location: 118204 - 119868 (+)
Type: TC
Location: 118204 - 119868 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Pasteurellaceae
Genus
Haemophilus_D
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.