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Cluster: WampachL_2018_SRR5575354_bin.4_CGC16

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC WampachL_2018_SRR5575354_bin.4_k141_5416 WampachL_2018_SRR5575354_bin.4_k141_5416_8 10299 10556 + 8.A.8.1.1
TC WampachL_2018_SRR5575354_bin.4_k141_5416 WampachL_2018_SRR5575354_bin.4_k141_5416_9 10636 12363 + 8.A.7.1.1
TC WampachL_2018_SRR5575354_bin.4_k141_5416 WampachL_2018_SRR5575354_bin.4_k141_5416_10 12423 12923 + 4.A.1.1.1
pfam WampachL_2018_SRR5575354_bin.4_k141_5416 WampachL_2018_SRR5575354_bin.4_k141_5416_11 12996 14195 + PMI_typeI_cat | MPI_cupin_dom
CAZyme WampachL_2018_SRR5575354_bin.4_k141_5416 WampachL_2018_SRR5575354_bin.4_k141_5416_12 14315 17341 + GH2
Gene ID: WampachL_2018_SRR5575354_bin.4_k141_5416_8
Type: TC
Location: 10299 - 10556 (+)
Gene ID: WampachL_2018_SRR5575354_bin.4_k141_5416_9
Type: TC
Location: 10636 - 12363 (+)
Gene ID: WampachL_2018_SRR5575354_bin.4_k141_5416_10
Type: TC
Location: 12423 - 12923 (+)
Gene ID: WampachL_2018_SRR5575354_bin.4_k141_5416_11
Type: pfam
Location: 12996 - 14195 (+)
Gene ID: WampachL_2018_SRR5575354_bin.4_k141_5416_12
Type: CAZyme
Location: 14315 - 17341 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
WampachL_2018_SRR5575354_bin.4_k141_5416_8 vegetarian > omnivore 1.03136 0.01162
WampachL_2018_SRR5575354_bin.4_k141_5416_10 vegan > omnivore 1.82825 0.01786
WampachL_2018_SRR5575354_bin.4_k141_5416_10 vegetarian > omnivore 1.05423 0.01162

🧭 Explore Read Mapping of CGC

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