Cluster: WampachL_2018_SRR5575354_bin.4_CGC15
🧬 Cluster Details
- Gene Count: 3
- CAZyme Count: 1
- Substrate:
- Genome ID: WampachL_2018_SRR5575354_bin.4
- Continent: Europe
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | WampachL_2018_SRR5575354_bin.4_k141_4809 | WampachL_2018_SRR5575354_bin.4_k141_4809_272 | 259578 | 259964 | - | 1.A.22.1.1 |
| TC | WampachL_2018_SRR5575354_bin.4_k141_4809 | WampachL_2018_SRR5575354_bin.4_k141_4809_273 | 260043 | 261419 | - | 2.A.38.1.1 |
| CAZyme | WampachL_2018_SRR5575354_bin.4_k141_4809 | WampachL_2018_SRR5575354_bin.4_k141_4809_274 | 261416 | 262231 | - | GT2 |
Gene ID: WampachL_2018_SRR5575354_bin.4_k141_4809_272
Type: TC
Location: 259578 - 259964 (-)
Type: TC
Location: 259578 - 259964 (-)
Gene ID: WampachL_2018_SRR5575354_bin.4_k141_4809_273
Type: TC
Location: 260043 - 261419 (-)
Type: TC
Location: 260043 - 261419 (-)
Gene ID: WampachL_2018_SRR5575354_bin.4_k141_4809_274
Type: CAZyme
Location: 261416 - 262231 (-)
Type: CAZyme
Location: 261416 - 262231 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Pasteurellaceae
Genus
Haemophilus_D
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| WampachL_2018_SRR5575354_bin.4_k141_4809_272 | vegan > omnivore | 2.22062 | 0.01786 |
| WampachL_2018_SRR5575354_bin.4_k141_4809_272 | vegetarian > omnivore | 3.38509 | 0.01162 |
| WampachL_2018_SRR5575354_bin.4_k141_4809_273 | vegetarian > omnivore | 1.31279 | 0.00878 |
| WampachL_2018_SRR5575354_bin.4_k141_4809_274 | vegan > omnivore | 1.96688 | 0.01786 |
| WampachL_2018_SRR5575354_bin.4_k141_4809_274 | vegetarian > omnivore | 1.37293 | 0.01162 |