Cluster: WampachL_2018_SRR5575354_bin.4_CGC13
🧬 Cluster Details
- Gene Count: 7
- CAZyme Count: 2
- Substrate:
- Genome ID: WampachL_2018_SRR5575354_bin.4
- Continent: Europe
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | WampachL_2018_SRR5575354_bin.4_k141_4809 | WampachL_2018_SRR5575354_bin.4_k141_4809_172 | 179025 | 179915 | + | 3.A.1.14.1 |
| TC | WampachL_2018_SRR5575354_bin.4_k141_4809 | WampachL_2018_SRR5575354_bin.4_k141_4809_173 | 179915 | 180904 | + | 3.A.1.14.1 |
| TC | WampachL_2018_SRR5575354_bin.4_k141_4809 | WampachL_2018_SRR5575354_bin.4_k141_4809_174 | 180904 | 181887 | + | 3.A.1.14.1 |
| TC | WampachL_2018_SRR5575354_bin.4_k141_4809 | WampachL_2018_SRR5575354_bin.4_k141_4809_175 | 181887 | 182654 | + | 3.A.1.14.8 |
| TC | WampachL_2018_SRR5575354_bin.4_k141_4809 | WampachL_2018_SRR5575354_bin.4_k141_4809_176 | 182872 | 185289 | + | 1.B.55.1.3 |
| CAZyme | WampachL_2018_SRR5575354_bin.4_k141_4809 | WampachL_2018_SRR5575354_bin.4_k141_4809_177 | 185311 | 187227 | + | CE4 | GH153 |
| CAZyme | WampachL_2018_SRR5575354_bin.4_k141_4809 | WampachL_2018_SRR5575354_bin.4_k141_4809_178 | 187237 | 188478 | + | GT2 |
Gene ID: WampachL_2018_SRR5575354_bin.4_k141_4809_172
Type: TC
Location: 179025 - 179915 (+)
Type: TC
Location: 179025 - 179915 (+)
Gene ID: WampachL_2018_SRR5575354_bin.4_k141_4809_173
Type: TC
Location: 179915 - 180904 (+)
Type: TC
Location: 179915 - 180904 (+)
Gene ID: WampachL_2018_SRR5575354_bin.4_k141_4809_174
Type: TC
Location: 180904 - 181887 (+)
Type: TC
Location: 180904 - 181887 (+)
Gene ID: WampachL_2018_SRR5575354_bin.4_k141_4809_175
Type: TC
Location: 181887 - 182654 (+)
Type: TC
Location: 181887 - 182654 (+)
Gene ID: WampachL_2018_SRR5575354_bin.4_k141_4809_176
Type: TC
Location: 182872 - 185289 (+)
Type: TC
Location: 182872 - 185289 (+)
Gene ID: WampachL_2018_SRR5575354_bin.4_k141_4809_177
Type: CAZyme
Location: 185311 - 187227 (+)
Type: CAZyme
Location: 185311 - 187227 (+)
Gene ID: WampachL_2018_SRR5575354_bin.4_k141_4809_178
Type: CAZyme
Location: 187237 - 188478 (+)
Type: CAZyme
Location: 187237 - 188478 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Pasteurellaceae
Genus
Haemophilus_D
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| WampachL_2018_SRR5575354_bin.4_k141_4809_172 | vegetarian > omnivore | 1.50156 | 0.01162 |
| WampachL_2018_SRR5575354_bin.4_k141_4809_173 | vegetarian > omnivore | 1.37836 | 0.01162 |