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Cluster: WampachL_2018_SRR5575354_bin.4_CGC12

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC WampachL_2018_SRR5575354_bin.4_k141_4809 WampachL_2018_SRR5575354_bin.4_k141_4809_142 140491 141792 - 2.A.26.1.2
TC WampachL_2018_SRR5575354_bin.4_k141_4809 WampachL_2018_SRR5575354_bin.4_k141_4809_143 142002 143189 + 2.A.33.1.2
CAZyme WampachL_2018_SRR5575354_bin.4_k141_4809 WampachL_2018_SRR5575354_bin.4_k141_4809_144 143198 144730 + GT2
pfam WampachL_2018_SRR5575354_bin.4_k141_4809 WampachL_2018_SRR5575354_bin.4_k141_4809_145 144822 145961 - DUF2827
TC WampachL_2018_SRR5575354_bin.4_k141_4809 WampachL_2018_SRR5575354_bin.4_k141_4809_146 146093 150538 - 1.B.40.1.5
TC WampachL_2018_SRR5575354_bin.4_k141_4809 WampachL_2018_SRR5575354_bin.4_k141_4809_147 150982 152151 + 8.A.1.1.1
TC WampachL_2018_SRR5575354_bin.4_k141_4809 WampachL_2018_SRR5575354_bin.4_k141_4809_148 152160 153686 + 2.A.1.3.2
pfam WampachL_2018_SRR5575354_bin.4_k141_4809 WampachL_2018_SRR5575354_bin.4_k141_4809_149 153743 156574 - UvrA_DNA-bind | UvrA_inter
pfam WampachL_2018_SRR5575354_bin.4_k141_4809 WampachL_2018_SRR5575354_bin.4_k141_4809_150 156737 157204 + SSB
TC WampachL_2018_SRR5575354_bin.4_k141_4809 WampachL_2018_SRR5575354_bin.4_k141_4809_151 157403 159166 - 2.A.37.1.2
Gene ID: WampachL_2018_SRR5575354_bin.4_k141_4809_142
Type: TC
Location: 140491 - 141792 (-)
Gene ID: WampachL_2018_SRR5575354_bin.4_k141_4809_143
Type: TC
Location: 142002 - 143189 (+)
Gene ID: WampachL_2018_SRR5575354_bin.4_k141_4809_144
Type: CAZyme
Location: 143198 - 144730 (+)
Gene ID: WampachL_2018_SRR5575354_bin.4_k141_4809_145
Type: pfam
Location: 144822 - 145961 (-)
Gene ID: WampachL_2018_SRR5575354_bin.4_k141_4809_146
Type: TC
Location: 146093 - 150538 (-)
Gene ID: WampachL_2018_SRR5575354_bin.4_k141_4809_147
Type: TC
Location: 150982 - 152151 (+)
Gene ID: WampachL_2018_SRR5575354_bin.4_k141_4809_148
Type: TC
Location: 152160 - 153686 (+)
Gene ID: WampachL_2018_SRR5575354_bin.4_k141_4809_149
Type: pfam
Location: 153743 - 156574 (-)
Gene ID: WampachL_2018_SRR5575354_bin.4_k141_4809_150
Type: pfam
Location: 156737 - 157204 (+)
Gene ID: WampachL_2018_SRR5575354_bin.4_k141_4809_151
Type: TC
Location: 157403 - 159166 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
WampachL_2018_SRR5575354_bin.4_k141_4809_145 vegetarian > vegan 1.15359 0.03086
WampachL_2018_SRR5575354_bin.4_k141_4809_150 vegan > omnivore 1.25741 0.01786

🧭 Explore Read Mapping of CGC

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