Cluster: WampachL_2018_SRR5575354_bin.4_CGC11
🧬 Cluster Details
- Gene Count: 4
- CAZyme Count: 1
- Substrate:
- Genome ID: WampachL_2018_SRR5575354_bin.4
- Continent: Europe
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | WampachL_2018_SRR5575354_bin.4_k141_4809 | WampachL_2018_SRR5575354_bin.4_k141_4809_116 | 110969 | 111460 | - | 9.B.105.1.1 |
| pfam | WampachL_2018_SRR5575354_bin.4_k141_4809 | WampachL_2018_SRR5575354_bin.4_k141_4809_117 | 111577 | 112947 | - | Hexapep | Hexapep | NTP_transferase | IspD | NTP_transf_3 | Hexapep_2 | Hexapep_2 |
| peptidase | WampachL_2018_SRR5575354_bin.4_k141_4809 | WampachL_2018_SRR5575354_bin.4_k141_4809_118 | 113206 | 114843 | + | C26.964 |
| CAZyme | WampachL_2018_SRR5575354_bin.4_k141_4809 | WampachL_2018_SRR5575354_bin.4_k141_4809_119 | 114966 | 115901 | + | GT2 |
Gene ID: WampachL_2018_SRR5575354_bin.4_k141_4809_116
Type: TC
Location: 110969 - 111460 (-)
Type: TC
Location: 110969 - 111460 (-)
Gene ID: WampachL_2018_SRR5575354_bin.4_k141_4809_117
Type: pfam
Location: 111577 - 112947 (-)
Type: pfam
Location: 111577 - 112947 (-)
Gene ID: WampachL_2018_SRR5575354_bin.4_k141_4809_118
Type: peptidase
Location: 113206 - 114843 (+)
Type: peptidase
Location: 113206 - 114843 (+)
Gene ID: WampachL_2018_SRR5575354_bin.4_k141_4809_119
Type: CAZyme
Location: 114966 - 115901 (+)
Type: CAZyme
Location: 114966 - 115901 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Pasteurellaceae
Genus
Haemophilus_D
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| WampachL_2018_SRR5575354_bin.4_k141_4809_116 | vegan > omnivore | 1.33569 | 0.01786 |
| WampachL_2018_SRR5575354_bin.4_k141_4809_116 | vegetarian > omnivore | 1.22668 | 0.01162 |