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Cluster: WampachL_2018_SRR5575354_bin.4_CGC1

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC WampachL_2018_SRR5575354_bin.4_k141_3011 WampachL_2018_SRR5575354_bin.4_k141_3011_53 65913 67367 - 2.A.47.3.1
peptidase WampachL_2018_SRR5575354_bin.4_k141_3011 WampachL_2018_SRR5575354_bin.4_k141_3011_54 67538 68473 - S33.UNW
pfam WampachL_2018_SRR5575354_bin.4_k141_3011 WampachL_2018_SRR5575354_bin.4_k141_3011_55 68528 69643 - Semialdhyde_dh | Semialdhyde_dhC
CAZyme WampachL_2018_SRR5575354_bin.4_k141_3011 WampachL_2018_SRR5575354_bin.4_k141_3011_56 69782 71800 - GT41
pfam WampachL_2018_SRR5575354_bin.4_k141_3011 WampachL_2018_SRR5575354_bin.4_k141_3011_57 71840 73177 - UPF0004 | Radical_SAM | TRAM_2
TC WampachL_2018_SRR5575354_bin.4_k141_3011 WampachL_2018_SRR5575354_bin.4_k141_3011_58 73343 74059 + 9.B.20.2.2
Gene ID: WampachL_2018_SRR5575354_bin.4_k141_3011_53
Type: TC
Location: 65913 - 67367 (-)
Gene ID: WampachL_2018_SRR5575354_bin.4_k141_3011_54
Type: peptidase
Location: 67538 - 68473 (-)
Gene ID: WampachL_2018_SRR5575354_bin.4_k141_3011_55
Type: pfam
Location: 68528 - 69643 (-)
Gene ID: WampachL_2018_SRR5575354_bin.4_k141_3011_56
Type: CAZyme
Location: 69782 - 71800 (-)
Gene ID: WampachL_2018_SRR5575354_bin.4_k141_3011_57
Type: pfam
Location: 71840 - 73177 (-)
Gene ID: WampachL_2018_SRR5575354_bin.4_k141_3011_58
Type: TC
Location: 73343 - 74059 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
WampachL_2018_SRR5575354_bin.4_k141_3011_58 vegetarian > omnivore 1.22497 0.01162

🧭 Explore Read Mapping of CGC

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