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Cluster: VatanenT_2016_SRR4408269_bin.4_CGC9

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC VatanenT_2016_SRR4408269_bin.4_k119_8189 VatanenT_2016_SRR4408269_bin.4_k119_8189_4 3724 5025 - 2.A.26.1.2
TC VatanenT_2016_SRR4408269_bin.4_k119_8189 VatanenT_2016_SRR4408269_bin.4_k119_8189_5 5228 6415 + 2.A.33.1.2
CAZyme VatanenT_2016_SRR4408269_bin.4_k119_8189 VatanenT_2016_SRR4408269_bin.4_k119_8189_6 6424 7965 + GT2
NULL(UNKNOWN) VatanenT_2016_SRR4408269_bin.4_k119_8189 VatanenT_2016_SRR4408269_bin.4_k119_8189_7 8106 9347 - NULL(UNKNOWN)
[View Structural Homologs]
pfam VatanenT_2016_SRR4408269_bin.4_k119_8189 VatanenT_2016_SRR4408269_bin.4_k119_8189_8 9405 10544 - DUF2827
TC VatanenT_2016_SRR4408269_bin.4_k119_8189 VatanenT_2016_SRR4408269_bin.4_k119_8189_9 10676 11554 - 1.B.40.1.5
Gene ID: VatanenT_2016_SRR4408269_bin.4_k119_8189_4
Type: TC
Location: 3724 - 5025 (-)
Gene ID: VatanenT_2016_SRR4408269_bin.4_k119_8189_5
Type: TC
Location: 5228 - 6415 (+)
Gene ID: VatanenT_2016_SRR4408269_bin.4_k119_8189_6
Type: CAZyme
Location: 6424 - 7965 (+)
Gene ID: VatanenT_2016_SRR4408269_bin.4_k119_8189_7
Type:
Location: 8106 - 9347 (-)
Gene ID: VatanenT_2016_SRR4408269_bin.4_k119_8189_8
Type: pfam
Location: 9405 - 10544 (-)
Gene ID: VatanenT_2016_SRR4408269_bin.4_k119_8189_9
Type: TC
Location: 10676 - 11554 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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