Cluster: VatanenT_2016_SRR4408269_bin.4_CGC8
🧬 Cluster Details
- Gene Count: 9
- CAZyme Count: 4
- Substrate:
- Genome ID: VatanenT_2016_SRR4408269_bin.4
- Continent: Europe
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | VatanenT_2016_SRR4408269_bin.4_k119_6483 | VatanenT_2016_SRR4408269_bin.4_k119_6483_6 | 5960 | 6730 | + | GT25 |
| NULL(UNKNOWN) | VatanenT_2016_SRR4408269_bin.4_k119_6483 | VatanenT_2016_SRR4408269_bin.4_k119_6483_7 | 6738 | 7937 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | VatanenT_2016_SRR4408269_bin.4_k119_6483 | VatanenT_2016_SRR4408269_bin.4_k119_6483_8 | 7930 | 8811 | + | GT2 |
| CAZyme | VatanenT_2016_SRR4408269_bin.4_k119_6483 | VatanenT_2016_SRR4408269_bin.4_k119_6483_9 | 8834 | 9637 | + | GT2 |
| CAZyme | VatanenT_2016_SRR4408269_bin.4_k119_6483 | VatanenT_2016_SRR4408269_bin.4_k119_6483_10 | 9671 | 10789 | + | GH103 |
| pfam | VatanenT_2016_SRR4408269_bin.4_k119_6483 | VatanenT_2016_SRR4408269_bin.4_k119_6483_11 | 10869 | 12008 | + | CCP_MauG |
| STP | VatanenT_2016_SRR4408269_bin.4_k119_6483 | VatanenT_2016_SRR4408269_bin.4_k119_6483_12 | 12107 | 13222 | + | Peripla_BP_2 |
| TC | VatanenT_2016_SRR4408269_bin.4_k119_6483 | VatanenT_2016_SRR4408269_bin.4_k119_6483_13 | 13238 | 14287 | + | 3.A.1.14.5 |
| TC | VatanenT_2016_SRR4408269_bin.4_k119_6483 | VatanenT_2016_SRR4408269_bin.4_k119_6483_14 | 14287 | 15060 | + | 3.A.1.14.19 |
Gene ID: VatanenT_2016_SRR4408269_bin.4_k119_6483_6
Type: CAZyme
Location: 5960 - 6730 (+)
Type: CAZyme
Location: 5960 - 6730 (+)
Gene ID: VatanenT_2016_SRR4408269_bin.4_k119_6483_7
Type:
Location: 6738 - 7937 (+)
Type:
Location: 6738 - 7937 (+)
Gene ID: VatanenT_2016_SRR4408269_bin.4_k119_6483_8
Type: CAZyme
Location: 7930 - 8811 (+)
Type: CAZyme
Location: 7930 - 8811 (+)
Gene ID: VatanenT_2016_SRR4408269_bin.4_k119_6483_9
Type: CAZyme
Location: 8834 - 9637 (+)
Type: CAZyme
Location: 8834 - 9637 (+)
Gene ID: VatanenT_2016_SRR4408269_bin.4_k119_6483_10
Type: CAZyme
Location: 9671 - 10789 (+)
Type: CAZyme
Location: 9671 - 10789 (+)
Gene ID: VatanenT_2016_SRR4408269_bin.4_k119_6483_11
Type: pfam
Location: 10869 - 12008 (+)
Type: pfam
Location: 10869 - 12008 (+)
Gene ID: VatanenT_2016_SRR4408269_bin.4_k119_6483_12
Type: STP
Location: 12107 - 13222 (+)
Type: STP
Location: 12107 - 13222 (+)
Gene ID: VatanenT_2016_SRR4408269_bin.4_k119_6483_13
Type: TC
Location: 13238 - 14287 (+)
Type: TC
Location: 13238 - 14287 (+)
Gene ID: VatanenT_2016_SRR4408269_bin.4_k119_6483_14
Type: TC
Location: 14287 - 15060 (+)
Type: TC
Location: 14287 - 15060 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Pasteurellaceae
Genus
Haemophilus_D
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
Loading chart...
Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| VatanenT_2016_SRR4408269_bin.4_k119_6483_8 | vegetarian > omnivore | 2.58713 | 0.01077 |
| VatanenT_2016_SRR4408269_bin.4_k119_6483_12 | vegan > omnivore | 1.87827 | 0.00918 |
| VatanenT_2016_SRR4408269_bin.4_k119_6483_12 | vegetarian > omnivore | 1.24118 | 0.01077 |