Cluster: VatanenT_2016_SRR4408269_bin.4_CGC7
🧬 Cluster Details
- Gene Count: 4
- CAZyme Count: 1
- Substrate:
- Genome ID: VatanenT_2016_SRR4408269_bin.4
- Continent: Europe
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | VatanenT_2016_SRR4408269_bin.4_k119_5153 | VatanenT_2016_SRR4408269_bin.4_k119_5153_1 | 66 | 677 | - | 5.A.3.2.1 |
| pfam | VatanenT_2016_SRR4408269_bin.4_k119_5153 | VatanenT_2016_SRR4408269_bin.4_k119_5153_2 | 952 | 1761 | + | FdhD-NarQ |
| CAZyme | VatanenT_2016_SRR4408269_bin.4_k119_5153 | VatanenT_2016_SRR4408269_bin.4_k119_5153_3 | 1830 | 2750 | + | GT8 |
| TC | VatanenT_2016_SRR4408269_bin.4_k119_5153 | VatanenT_2016_SRR4408269_bin.4_k119_5153_4 | 2804 | 3850 | - | 3.A.1.20.2 |
Gene ID: VatanenT_2016_SRR4408269_bin.4_k119_5153_1
Type: TC
Location: 66 - 677 (-)
Type: TC
Location: 66 - 677 (-)
Gene ID: VatanenT_2016_SRR4408269_bin.4_k119_5153_2
Type: pfam
Location: 952 - 1761 (+)
Type: pfam
Location: 952 - 1761 (+)
Gene ID: VatanenT_2016_SRR4408269_bin.4_k119_5153_3
Type: CAZyme
Location: 1830 - 2750 (+)
Type: CAZyme
Location: 1830 - 2750 (+)
Gene ID: VatanenT_2016_SRR4408269_bin.4_k119_5153_4
Type: TC
Location: 2804 - 3850 (-)
Type: TC
Location: 2804 - 3850 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Pasteurellaceae
Genus
Haemophilus_D
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| VatanenT_2016_SRR4408269_bin.4_k119_5153_1 | vegan > omnivore | 1.62428 | 0.00918 |