Cluster: VatanenT_2016_SRR4408269_bin.4_CGC5
🧬 Cluster Details
- Gene Count: 3
- CAZyme Count: 1
- Substrate:
- Genome ID: VatanenT_2016_SRR4408269_bin.4
- Continent: Europe
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | VatanenT_2016_SRR4408269_bin.4_k119_2003 | VatanenT_2016_SRR4408269_bin.4_k119_2003_4 | 3782 | 5176 | + | 9.B.24.1.2 |
| pfam | VatanenT_2016_SRR4408269_bin.4_k119_2003 | VatanenT_2016_SRR4408269_bin.4_k119_2003_5 | 5348 | 7063 | - | tRNA-synt_2b | HGTP_anticodon | tRNA_edit |
| CAZyme | VatanenT_2016_SRR4408269_bin.4_k119_2003 | VatanenT_2016_SRR4408269_bin.4_k119_2003_6 | 7159 | 8400 | - | CBM50 |
Gene ID: VatanenT_2016_SRR4408269_bin.4_k119_2003_4
Type: TC
Location: 3782 - 5176 (+)
Type: TC
Location: 3782 - 5176 (+)
Gene ID: VatanenT_2016_SRR4408269_bin.4_k119_2003_5
Type: pfam
Location: 5348 - 7063 (-)
Type: pfam
Location: 5348 - 7063 (-)
Gene ID: VatanenT_2016_SRR4408269_bin.4_k119_2003_6
Type: CAZyme
Location: 7159 - 8400 (-)
Type: CAZyme
Location: 7159 - 8400 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Pasteurellaceae
Genus
Haemophilus_D
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| VatanenT_2016_SRR4408269_bin.4_k119_2003_6 | vegetarian > omnivore | 1.19233 | 0.01077 |