Cluster: VatanenT_2016_SRR4408269_bin.4_CGC4
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 2
- Substrate:
- Genome ID: VatanenT_2016_SRR4408269_bin.4
- Continent: Europe
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | VatanenT_2016_SRR4408269_bin.4_k119_1691 | VatanenT_2016_SRR4408269_bin.4_k119_1691_7 | 6940 | 8019 | - | 1.B.1.3.3 |
| CAZyme | VatanenT_2016_SRR4408269_bin.4_k119_1691 | VatanenT_2016_SRR4408269_bin.4_k119_1691_8 | 8184 | 9137 | - | GT9 |
| TC | VatanenT_2016_SRR4408269_bin.4_k119_1691 | VatanenT_2016_SRR4408269_bin.4_k119_1691_9 | 9134 | 10039 | - | 2.A.7.3.58 |
| NULL(UNKNOWN) | VatanenT_2016_SRR4408269_bin.4_k119_1691 | VatanenT_2016_SRR4408269_bin.4_k119_1691_10 | 10068 | 10652 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | VatanenT_2016_SRR4408269_bin.4_k119_1691 | VatanenT_2016_SRR4408269_bin.4_k119_1691_11 | 10670 | 11719 | - | GT9 |
Gene ID: VatanenT_2016_SRR4408269_bin.4_k119_1691_7
Type: TC
Location: 6940 - 8019 (-)
Type: TC
Location: 6940 - 8019 (-)
Gene ID: VatanenT_2016_SRR4408269_bin.4_k119_1691_8
Type: CAZyme
Location: 8184 - 9137 (-)
Type: CAZyme
Location: 8184 - 9137 (-)
Gene ID: VatanenT_2016_SRR4408269_bin.4_k119_1691_9
Type: TC
Location: 9134 - 10039 (-)
Type: TC
Location: 9134 - 10039 (-)
Gene ID: VatanenT_2016_SRR4408269_bin.4_k119_1691_10
Type:
Location: 10068 - 10652 (-)
Type:
Location: 10068 - 10652 (-)
Gene ID: VatanenT_2016_SRR4408269_bin.4_k119_1691_11
Type: CAZyme
Location: 10670 - 11719 (-)
Type: CAZyme
Location: 10670 - 11719 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Pasteurellaceae
Genus
Haemophilus_D
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.