Cluster: VatanenT_2016_SRR4408269_bin.4_CGC3
🧬 Cluster Details
- Gene Count: 3
- CAZyme Count: 1
- Substrate:
- Genome ID: VatanenT_2016_SRR4408269_bin.4
- Continent: Europe
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | VatanenT_2016_SRR4408269_bin.4_k119_1435 | VatanenT_2016_SRR4408269_bin.4_k119_1435_1 | 3 | 431 | - | 2.A.1.20.4 |
| pfam | VatanenT_2016_SRR4408269_bin.4_k119_1435 | VatanenT_2016_SRR4408269_bin.4_k119_1435_2 | 504 | 1121 | - | Y_phosphatase | DSPc | Y_phosphatase2 | Y_phosphatase3 | PTP-NADK | Tc-R-P |
| CAZyme | VatanenT_2016_SRR4408269_bin.4_k119_1435 | VatanenT_2016_SRR4408269_bin.4_k119_1435_3 | 1131 | 2585 | - | GH32 |
Gene ID: VatanenT_2016_SRR4408269_bin.4_k119_1435_1
Type: TC
Location: 3 - 431 (-)
Type: TC
Location: 3 - 431 (-)
Gene ID: VatanenT_2016_SRR4408269_bin.4_k119_1435_2
Type: pfam
Location: 504 - 1121 (-)
Type: pfam
Location: 504 - 1121 (-)
Gene ID: VatanenT_2016_SRR4408269_bin.4_k119_1435_3
Type: CAZyme
Location: 1131 - 2585 (-)
Type: CAZyme
Location: 1131 - 2585 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Pasteurellaceae
Genus
Haemophilus_D
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| VatanenT_2016_SRR4408269_bin.4_k119_1435_3 | vegan > omnivore | 1.07010 | 0.00918 |