Cluster: VatanenT_2016_SRR4408269_bin.4_CGC20
🧬 Cluster Details
- Gene Count: 10
- CAZyme Count: 1
- Substrate:
- Genome ID: VatanenT_2016_SRR4408269_bin.4
- Continent: Europe
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | VatanenT_2016_SRR4408269_bin.4_k119_21632 | VatanenT_2016_SRR4408269_bin.4_k119_21632_5 | 2740 | 3528 | + | 3.A.2.1.1 |
| TC | VatanenT_2016_SRR4408269_bin.4_k119_21632 | VatanenT_2016_SRR4408269_bin.4_k119_21632_6 | 3585 | 3839 | + | 3.A.2.1.1 |
| TC | VatanenT_2016_SRR4408269_bin.4_k119_21632 | VatanenT_2016_SRR4408269_bin.4_k119_21632_7 | 3889 | 4359 | + | 3.A.2.1.1 |
| TC | VatanenT_2016_SRR4408269_bin.4_k119_21632 | VatanenT_2016_SRR4408269_bin.4_k119_21632_8 | 4372 | 4905 | + | 3.A.2.1.1 |
| TC | VatanenT_2016_SRR4408269_bin.4_k119_21632 | VatanenT_2016_SRR4408269_bin.4_k119_21632_9 | 4918 | 6459 | + | 3.A.2.1.1 |
| TC | VatanenT_2016_SRR4408269_bin.4_k119_21632 | VatanenT_2016_SRR4408269_bin.4_k119_21632_10 | 6478 | 7347 | + | 3.A.2.1.1 |
| TC | VatanenT_2016_SRR4408269_bin.4_k119_21632 | VatanenT_2016_SRR4408269_bin.4_k119_21632_11 | 7364 | 8737 | + | 3.A.2.1.1 |
| TC | VatanenT_2016_SRR4408269_bin.4_k119_21632 | VatanenT_2016_SRR4408269_bin.4_k119_21632_12 | 8768 | 9196 | + | 3.A.2.1.1 |
| STP | VatanenT_2016_SRR4408269_bin.4_k119_21632 | VatanenT_2016_SRR4408269_bin.4_k119_21632_13 | 9248 | 10789 | - | PALP |
| CAZyme | VatanenT_2016_SRR4408269_bin.4_k119_21632 | VatanenT_2016_SRR4408269_bin.4_k119_21632_14 | 10867 | 11586 | - | GT25 |
Gene ID: VatanenT_2016_SRR4408269_bin.4_k119_21632_5
Type: TC
Location: 2740 - 3528 (+)
Type: TC
Location: 2740 - 3528 (+)
Gene ID: VatanenT_2016_SRR4408269_bin.4_k119_21632_6
Type: TC
Location: 3585 - 3839 (+)
Type: TC
Location: 3585 - 3839 (+)
Gene ID: VatanenT_2016_SRR4408269_bin.4_k119_21632_7
Type: TC
Location: 3889 - 4359 (+)
Type: TC
Location: 3889 - 4359 (+)
Gene ID: VatanenT_2016_SRR4408269_bin.4_k119_21632_8
Type: TC
Location: 4372 - 4905 (+)
Type: TC
Location: 4372 - 4905 (+)
Gene ID: VatanenT_2016_SRR4408269_bin.4_k119_21632_9
Type: TC
Location: 4918 - 6459 (+)
Type: TC
Location: 4918 - 6459 (+)
Gene ID: VatanenT_2016_SRR4408269_bin.4_k119_21632_10
Type: TC
Location: 6478 - 7347 (+)
Type: TC
Location: 6478 - 7347 (+)
Gene ID: VatanenT_2016_SRR4408269_bin.4_k119_21632_11
Type: TC
Location: 7364 - 8737 (+)
Type: TC
Location: 7364 - 8737 (+)
Gene ID: VatanenT_2016_SRR4408269_bin.4_k119_21632_12
Type: TC
Location: 8768 - 9196 (+)
Type: TC
Location: 8768 - 9196 (+)
Gene ID: VatanenT_2016_SRR4408269_bin.4_k119_21632_13
Type: STP
Location: 9248 - 10789 (-)
Type: STP
Location: 9248 - 10789 (-)
Gene ID: VatanenT_2016_SRR4408269_bin.4_k119_21632_14
Type: CAZyme
Location: 10867 - 11586 (-)
Type: CAZyme
Location: 10867 - 11586 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Pasteurellaceae
Genus
Haemophilus_D
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
Loading chart...
Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| VatanenT_2016_SRR4408269_bin.4_k119_21632_6 | vegan > omnivore | 1.55939 | 0.00918 |
| VatanenT_2016_SRR4408269_bin.4_k119_21632_6 | vegetarian > omnivore | 1.03131 | 0.01077 |
| VatanenT_2016_SRR4408269_bin.4_k119_21632_7 | vegan > omnivore | 1.09250 | 0.00918 |
| VatanenT_2016_SRR4408269_bin.4_k119_21632_9 | vegetarian > omnivore | 2.63599 | 0.01077 |
| VatanenT_2016_SRR4408269_bin.4_k119_21632_9 | vegan > omnivore | 2.47538 | 0.00918 |