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Cluster: VatanenT_2016_SRR4408269_bin.4_CGC2

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme VatanenT_2016_SRR4408269_bin.4_k119_963 VatanenT_2016_SRR4408269_bin.4_k119_963_13 9912 10955 + GH3
pfam VatanenT_2016_SRR4408269_bin.4_k119_963 VatanenT_2016_SRR4408269_bin.4_k119_963_14 10952 12124 + MTS | tRNA_U5-meth_tr | Methyltransf_25 | Methyltransf_31
TC VatanenT_2016_SRR4408269_bin.4_k119_963 VatanenT_2016_SRR4408269_bin.4_k119_963_15 12160 12993 - 3.A.1.15.4
TC VatanenT_2016_SRR4408269_bin.4_k119_963 VatanenT_2016_SRR4408269_bin.4_k119_963_16 12986 13837 - 3.A.1.15.4
Gene ID: VatanenT_2016_SRR4408269_bin.4_k119_963_13
Type: CAZyme
Location: 9912 - 10955 (+)
Gene ID: VatanenT_2016_SRR4408269_bin.4_k119_963_14
Type: pfam
Location: 10952 - 12124 (+)
Gene ID: VatanenT_2016_SRR4408269_bin.4_k119_963_15
Type: TC
Location: 12160 - 12993 (-)
Gene ID: VatanenT_2016_SRR4408269_bin.4_k119_963_16
Type: TC
Location: 12986 - 13837 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
VatanenT_2016_SRR4408269_bin.4_k119_963_14 vegan > omnivore 1.17836 0.00918
VatanenT_2016_SRR4408269_bin.4_k119_963_14 vegetarian > omnivore 1.14456 0.01077
VatanenT_2016_SRR4408269_bin.4_k119_963_15 vegan > omnivore 2.44928 0.00918
VatanenT_2016_SRR4408269_bin.4_k119_963_15 vegetarian > omnivore 1.49331 0.01077
VatanenT_2016_SRR4408269_bin.4_k119_963_16 vegan > omnivore 2.43378 0.00918
VatanenT_2016_SRR4408269_bin.4_k119_963_16 vegetarian > omnivore 1.65259 0.01077

🧭 Explore Read Mapping of CGC

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