Cluster: VatanenT_2016_SRR4408269_bin.4_CGC17
🧬 Cluster Details
- Gene Count: 3
- CAZyme Count: 1
- Substrate:
- Genome ID: VatanenT_2016_SRR4408269_bin.4
- Continent: Europe
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | VatanenT_2016_SRR4408269_bin.4_k119_14784 | VatanenT_2016_SRR4408269_bin.4_k119_14784_2 | 172 | 987 | + | GT2 |
| TC | VatanenT_2016_SRR4408269_bin.4_k119_14784 | VatanenT_2016_SRR4408269_bin.4_k119_14784_3 | 984 | 2360 | + | 2.A.38.1.1 |
| TC | VatanenT_2016_SRR4408269_bin.4_k119_14784 | VatanenT_2016_SRR4408269_bin.4_k119_14784_4 | 2439 | 2822 | + | 1.A.22.1.1 |
Gene ID: VatanenT_2016_SRR4408269_bin.4_k119_14784_2
Type: CAZyme
Location: 172 - 987 (+)
Type: CAZyme
Location: 172 - 987 (+)
Gene ID: VatanenT_2016_SRR4408269_bin.4_k119_14784_3
Type: TC
Location: 984 - 2360 (+)
Type: TC
Location: 984 - 2360 (+)
Gene ID: VatanenT_2016_SRR4408269_bin.4_k119_14784_4
Type: TC
Location: 2439 - 2822 (+)
Type: TC
Location: 2439 - 2822 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Pasteurellaceae
Genus
Haemophilus_D
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| VatanenT_2016_SRR4408269_bin.4_k119_14784_2 | vegan > omnivore | 2.01626 | 0.00918 |
| VatanenT_2016_SRR4408269_bin.4_k119_14784_2 | vegetarian > omnivore | 1.41147 | 0.01077 |
| VatanenT_2016_SRR4408269_bin.4_k119_14784_3 | vegetarian > omnivore | 1.21396 | 0.01077 |
| VatanenT_2016_SRR4408269_bin.4_k119_14784_4 | vegan > omnivore | 1.89058 | 0.00918 |
| VatanenT_2016_SRR4408269_bin.4_k119_14784_4 | vegetarian > omnivore | 2.98380 | 0.01077 |