Cluster: VatanenT_2016_SRR4408269_bin.4_CGC16
🧬 Cluster Details
- Gene Count: 4
- CAZyme Count: 1
- Substrate:
- Genome ID: VatanenT_2016_SRR4408269_bin.4
- Continent: Europe
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | VatanenT_2016_SRR4408269_bin.4_k119_14061 | VatanenT_2016_SRR4408269_bin.4_k119_14061_2 | 139 | 1221 | + | 9.B.146.1.6 |
| pfam | VatanenT_2016_SRR4408269_bin.4_k119_14061 | VatanenT_2016_SRR4408269_bin.4_k119_14061_3 | 1284 | 2597 | + | Mur_ligase_C | Mur_ligase_M | MurD-like_N |
| TC | VatanenT_2016_SRR4408269_bin.4_k119_14061 | VatanenT_2016_SRR4408269_bin.4_k119_14061_4 | 2613 | 3797 | + | 2.A.103.1.1 |
| CAZyme | VatanenT_2016_SRR4408269_bin.4_k119_14061 | VatanenT_2016_SRR4408269_bin.4_k119_14061_5 | 3806 | 4858 | + | GT28 |
Gene ID: VatanenT_2016_SRR4408269_bin.4_k119_14061_2
Type: TC
Location: 139 - 1221 (+)
Type: TC
Location: 139 - 1221 (+)
Gene ID: VatanenT_2016_SRR4408269_bin.4_k119_14061_3
Type: pfam
Location: 1284 - 2597 (+)
Type: pfam
Location: 1284 - 2597 (+)
Gene ID: VatanenT_2016_SRR4408269_bin.4_k119_14061_4
Type: TC
Location: 2613 - 3797 (+)
Type: TC
Location: 2613 - 3797 (+)
Gene ID: VatanenT_2016_SRR4408269_bin.4_k119_14061_5
Type: CAZyme
Location: 3806 - 4858 (+)
Type: CAZyme
Location: 3806 - 4858 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Pasteurellaceae
Genus
Haemophilus_D
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.