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Cluster: VatanenT_2016_SRR4408269_bin.4_CGC15

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC VatanenT_2016_SRR4408269_bin.4_k119_13793 VatanenT_2016_SRR4408269_bin.4_k119_13793_3 1895 2152 + 8.A.8.1.1
TC VatanenT_2016_SRR4408269_bin.4_k119_13793 VatanenT_2016_SRR4408269_bin.4_k119_13793_4 2232 3959 + 8.A.7.1.1
TC VatanenT_2016_SRR4408269_bin.4_k119_13793 VatanenT_2016_SRR4408269_bin.4_k119_13793_5 4019 4519 + 4.A.1.1.1
pfam VatanenT_2016_SRR4408269_bin.4_k119_13793 VatanenT_2016_SRR4408269_bin.4_k119_13793_6 4592 5791 + PMI_typeI_cat
CAZyme VatanenT_2016_SRR4408269_bin.4_k119_13793 VatanenT_2016_SRR4408269_bin.4_k119_13793_7 5913 8306 + GH2
Gene ID: VatanenT_2016_SRR4408269_bin.4_k119_13793_3
Type: TC
Location: 1895 - 2152 (+)
Gene ID: VatanenT_2016_SRR4408269_bin.4_k119_13793_4
Type: TC
Location: 2232 - 3959 (+)
Gene ID: VatanenT_2016_SRR4408269_bin.4_k119_13793_5
Type: TC
Location: 4019 - 4519 (+)
Gene ID: VatanenT_2016_SRR4408269_bin.4_k119_13793_6
Type: pfam
Location: 4592 - 5791 (+)
Gene ID: VatanenT_2016_SRR4408269_bin.4_k119_13793_7
Type: CAZyme
Location: 5913 - 8306 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
VatanenT_2016_SRR4408269_bin.4_k119_13793_5 vegan > omnivore 2.37053 0.00918
VatanenT_2016_SRR4408269_bin.4_k119_13793_5 vegetarian > omnivore 1.55619 0.01077

🧭 Explore Read Mapping of CGC

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