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Cluster: VatanenT_2016_SRR4408269_bin.4_CGC14

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme VatanenT_2016_SRR4408269_bin.4_k119_13238 VatanenT_2016_SRR4408269_bin.4_k119_13238_1 3 704 - CE4
TC VatanenT_2016_SRR4408269_bin.4_k119_13238 VatanenT_2016_SRR4408269_bin.4_k119_13238_2 726 1373 - 1.B.55.1.3
TC VatanenT_2016_SRR4408269_bin.4_k119_13238 VatanenT_2016_SRR4408269_bin.4_k119_13238_3 1376 3142 - 1.B.55.1.3
TC VatanenT_2016_SRR4408269_bin.4_k119_13238 VatanenT_2016_SRR4408269_bin.4_k119_13238_4 3353 4120 - 3.A.1.14.8
TC VatanenT_2016_SRR4408269_bin.4_k119_13238 VatanenT_2016_SRR4408269_bin.4_k119_13238_5 4120 4761 - 3.A.1.14.1
Gene ID: VatanenT_2016_SRR4408269_bin.4_k119_13238_1
Type: CAZyme
Location: 3 - 704 (-)
Gene ID: VatanenT_2016_SRR4408269_bin.4_k119_13238_2
Type: TC
Location: 726 - 1373 (-)
Gene ID: VatanenT_2016_SRR4408269_bin.4_k119_13238_3
Type: TC
Location: 1376 - 3142 (-)
Gene ID: VatanenT_2016_SRR4408269_bin.4_k119_13238_4
Type: TC
Location: 3353 - 4120 (-)
Gene ID: VatanenT_2016_SRR4408269_bin.4_k119_13238_5
Type: TC
Location: 4120 - 4761 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
VatanenT_2016_SRR4408269_bin.4_k119_13238_4 vegan > omnivore 1.26066 0.00918
VatanenT_2016_SRR4408269_bin.4_k119_13238_4 vegetarian > omnivore 1.14677 0.01077

🧭 Explore Read Mapping of CGC

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