Cluster: VatanenT_2016_SRR4408269_bin.4_CGC12
🧬 Cluster Details
- Gene Count: 4
- CAZyme Count: 2
- Substrate:
- Genome ID: VatanenT_2016_SRR4408269_bin.4
- Continent: Europe
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | VatanenT_2016_SRR4408269_bin.4_k119_9804 | VatanenT_2016_SRR4408269_bin.4_k119_9804_2 | 879 | 2543 | - | 4.A.1.1.11 |
| pfam | VatanenT_2016_SRR4408269_bin.4_k119_9804 | VatanenT_2016_SRR4408269_bin.4_k119_9804_3 | 2554 | 3345 | - | Exo_endo_phos |
| CAZyme | VatanenT_2016_SRR4408269_bin.4_k119_9804 | VatanenT_2016_SRR4408269_bin.4_k119_9804_4 | 3355 | 5622 | - | GT35 |
| CAZyme | VatanenT_2016_SRR4408269_bin.4_k119_9804 | VatanenT_2016_SRR4408269_bin.4_k119_9804_5 | 5622 | 7127 | - | GH77 |
Gene ID: VatanenT_2016_SRR4408269_bin.4_k119_9804_2
Type: TC
Location: 879 - 2543 (-)
Type: TC
Location: 879 - 2543 (-)
Gene ID: VatanenT_2016_SRR4408269_bin.4_k119_9804_3
Type: pfam
Location: 2554 - 3345 (-)
Type: pfam
Location: 2554 - 3345 (-)
Gene ID: VatanenT_2016_SRR4408269_bin.4_k119_9804_4
Type: CAZyme
Location: 3355 - 5622 (-)
Type: CAZyme
Location: 3355 - 5622 (-)
Gene ID: VatanenT_2016_SRR4408269_bin.4_k119_9804_5
Type: CAZyme
Location: 5622 - 7127 (-)
Type: CAZyme
Location: 5622 - 7127 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Pasteurellaceae
Genus
Haemophilus_D
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.