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Cluster: VatanenT_2016_SRR4408269_bin.4_CGC11

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme VatanenT_2016_SRR4408269_bin.4_k119_9393 VatanenT_2016_SRR4408269_bin.4_k119_9393_2 1390 2418 + GT9
TC VatanenT_2016_SRR4408269_bin.4_k119_9393 VatanenT_2016_SRR4408269_bin.4_k119_9393_3 2368 3033 - 2.A.115.2.7
pfam VatanenT_2016_SRR4408269_bin.4_k119_9393 VatanenT_2016_SRR4408269_bin.4_k119_9393_4 3224 4765 + PFL-like | YjjI-like
TC VatanenT_2016_SRR4408269_bin.4_k119_9393 VatanenT_2016_SRR4408269_bin.4_k119_9393_5 4808 6673 - 2.A.16.2.2
TC VatanenT_2016_SRR4408269_bin.4_k119_9393 VatanenT_2016_SRR4408269_bin.4_k119_9393_6 6673 6957 - 9.B.21.2.1
Gene ID: VatanenT_2016_SRR4408269_bin.4_k119_9393_2
Type: CAZyme
Location: 1390 - 2418 (+)
Gene ID: VatanenT_2016_SRR4408269_bin.4_k119_9393_3
Type: TC
Location: 2368 - 3033 (-)
Gene ID: VatanenT_2016_SRR4408269_bin.4_k119_9393_4
Type: pfam
Location: 3224 - 4765 (+)
Gene ID: VatanenT_2016_SRR4408269_bin.4_k119_9393_5
Type: TC
Location: 4808 - 6673 (-)
Gene ID: VatanenT_2016_SRR4408269_bin.4_k119_9393_6
Type: TC
Location: 6673 - 6957 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
VatanenT_2016_SRR4408269_bin.4_k119_9393_2 vegan > omnivore 1.05397 0.00918
VatanenT_2016_SRR4408269_bin.4_k119_9393_3 vegan > omnivore 1.45388 0.00918
VatanenT_2016_SRR4408269_bin.4_k119_9393_3 vegetarian > omnivore 1.22666 0.01077

🧭 Explore Read Mapping of CGC

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