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Cluster: VatanenT_2016_SRR4408211_bin.5_CGC3

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme VatanenT_2016_SRR4408211_bin.5_k119_7561 VatanenT_2016_SRR4408211_bin.5_k119_7561_4 3445 5310 + GT51
pfam VatanenT_2016_SRR4408211_bin.5_k119_7561 VatanenT_2016_SRR4408211_bin.5_k119_7561_5 5336 6583 - Phosphodiest
STP VatanenT_2016_SRR4408211_bin.5_k119_7561 VatanenT_2016_SRR4408211_bin.5_k119_7561_6 6585 7865 - SBP_bac_1
TC VatanenT_2016_SRR4408211_bin.5_k119_7561 VatanenT_2016_SRR4408211_bin.5_k119_7561_7 7876 8694 - 3.A.1.1.36
TC VatanenT_2016_SRR4408211_bin.5_k119_7561 VatanenT_2016_SRR4408211_bin.5_k119_7561_8 8704 9567 - 3.A.1.1.11
TC VatanenT_2016_SRR4408211_bin.5_k119_7561 VatanenT_2016_SRR4408211_bin.5_k119_7561_9 9564 10604 - 3.A.1.1.26
Gene ID: VatanenT_2016_SRR4408211_bin.5_k119_7561_4
Type: CAZyme
Location: 3445 - 5310 (+)
Gene ID: VatanenT_2016_SRR4408211_bin.5_k119_7561_5
Type: pfam
Location: 5336 - 6583 (-)
Gene ID: VatanenT_2016_SRR4408211_bin.5_k119_7561_6
Type: STP
Location: 6585 - 7865 (-)
Gene ID: VatanenT_2016_SRR4408211_bin.5_k119_7561_7
Type: TC
Location: 7876 - 8694 (-)
Gene ID: VatanenT_2016_SRR4408211_bin.5_k119_7561_8
Type: TC
Location: 8704 - 9567 (-)
Gene ID: VatanenT_2016_SRR4408211_bin.5_k119_7561_9
Type: TC
Location: 9564 - 10604 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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