Cluster: VatanenT_2016_SRR4305271_bin.2_CGC8
🧬 Cluster Details
- Gene Count: 7
- CAZyme Count: 1
- Substrate:
- Genome ID: VatanenT_2016_SRR4305271_bin.2
- Continent: Asia
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | VatanenT_2016_SRR4305271_bin.2_k119_5569 | VatanenT_2016_SRR4305271_bin.2_k119_5569_8 | 10701 | 13781 | - | 2.A.6.3.6 |
| TC | VatanenT_2016_SRR4305271_bin.2_k119_5569 | VatanenT_2016_SRR4305271_bin.2_k119_5569_9 | 13784 | 14887 | - | 3.A.1.122.1 |
| pfam | VatanenT_2016_SRR4305271_bin.2_k119_5569 | VatanenT_2016_SRR4305271_bin.2_k119_5569_10 | 15262 | 16707 | - | tRNA-synt_2b | HGTP_anticodon | ProRS-C_1 |
| CAZyme | VatanenT_2016_SRR4305271_bin.2_k119_5569 | VatanenT_2016_SRR4305271_bin.2_k119_5569_11 | 17137 | 18903 | + | CBM50 |
| pfam | VatanenT_2016_SRR4305271_bin.2_k119_5569 | VatanenT_2016_SRR4305271_bin.2_k119_5569_12 | 19100 | 19942 | - | Metallophos |
| pfam | VatanenT_2016_SRR4305271_bin.2_k119_5569 | VatanenT_2016_SRR4305271_bin.2_k119_5569_13 | 20069 | 20326 | - | VEG |
| TC | VatanenT_2016_SRR4305271_bin.2_k119_5569 | VatanenT_2016_SRR4305271_bin.2_k119_5569_14 | 20626 | 21561 | + | 1.A.35.3.1 |
Gene ID: VatanenT_2016_SRR4305271_bin.2_k119_5569_8
Type: TC
Location: 10701 - 13781 (-)
Type: TC
Location: 10701 - 13781 (-)
Gene ID: VatanenT_2016_SRR4305271_bin.2_k119_5569_9
Type: TC
Location: 13784 - 14887 (-)
Type: TC
Location: 13784 - 14887 (-)
Gene ID: VatanenT_2016_SRR4305271_bin.2_k119_5569_10
Type: pfam
Location: 15262 - 16707 (-)
Type: pfam
Location: 15262 - 16707 (-)
Gene ID: VatanenT_2016_SRR4305271_bin.2_k119_5569_11
Type: CAZyme
Location: 17137 - 18903 (+)
Type: CAZyme
Location: 17137 - 18903 (+)
Gene ID: VatanenT_2016_SRR4305271_bin.2_k119_5569_12
Type: pfam
Location: 19100 - 19942 (-)
Type: pfam
Location: 19100 - 19942 (-)
Gene ID: VatanenT_2016_SRR4305271_bin.2_k119_5569_13
Type: pfam
Location: 20069 - 20326 (-)
Type: pfam
Location: 20069 - 20326 (-)
Gene ID: VatanenT_2016_SRR4305271_bin.2_k119_5569_14
Type: TC
Location: 20626 - 21561 (+)
Type: TC
Location: 20626 - 21561 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Tissierellales
Family
Sedimentibacteraceae
Genus
Sedimentibacter
Species
Sedimentibacter sp003457065
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.