Cluster: VatanenT_2016_SRR4305271_bin.2_CGC6
🧬 Cluster Details
- Gene Count: 4
- CAZyme Count: 1
- Substrate:
- Genome ID: VatanenT_2016_SRR4305271_bin.2
- Continent: Asia
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | VatanenT_2016_SRR4305271_bin.2_k119_5174 | VatanenT_2016_SRR4305271_bin.2_k119_5174_35 | 31744 | 33126 | - | GH18 |
| pfam | VatanenT_2016_SRR4305271_bin.2_k119_5174 | VatanenT_2016_SRR4305271_bin.2_k119_5174_36 | 33238 | 34881 | - | Cu_amine_oxidN1 | Cu_amine_oxidN1 | PrcB_C |
| TF | VatanenT_2016_SRR4305271_bin.2_k119_5174 | VatanenT_2016_SRR4305271_bin.2_k119_5174_37 | 35061 | 36035 | + | HTH_11 |
| TC | VatanenT_2016_SRR4305271_bin.2_k119_5174 | VatanenT_2016_SRR4305271_bin.2_k119_5174_38 | 36051 | 36599 | + | 3.A.1.25.5 |
Gene ID: VatanenT_2016_SRR4305271_bin.2_k119_5174_35
Type: CAZyme
Location: 31744 - 33126 (-)
Type: CAZyme
Location: 31744 - 33126 (-)
Gene ID: VatanenT_2016_SRR4305271_bin.2_k119_5174_36
Type: pfam
Location: 33238 - 34881 (-)
Type: pfam
Location: 33238 - 34881 (-)
Gene ID: VatanenT_2016_SRR4305271_bin.2_k119_5174_37
Type: TF
Location: 35061 - 36035 (+)
Type: TF
Location: 35061 - 36035 (+)
Gene ID: VatanenT_2016_SRR4305271_bin.2_k119_5174_38
Type: TC
Location: 36051 - 36599 (+)
Type: TC
Location: 36051 - 36599 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Tissierellales
Family
Sedimentibacteraceae
Genus
Sedimentibacter
Species
Sedimentibacter sp003457065
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.