Cluster: VatanenT_2016_SRR4305271_bin.2_CGC5
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 2
- Substrate:
- Genome ID: VatanenT_2016_SRR4305271_bin.2
- Continent: Asia
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | VatanenT_2016_SRR4305271_bin.2_k119_4535 | VatanenT_2016_SRR4305271_bin.2_k119_4535_20 | 23881 | 25371 | + | CBM50 |
| STP | VatanenT_2016_SRR4305271_bin.2_k119_4535 | VatanenT_2016_SRR4305271_bin.2_k119_4535_21 | 25653 | 26138 | + | HD |
| pfam | VatanenT_2016_SRR4305271_bin.2_k119_4535 | VatanenT_2016_SRR4305271_bin.2_k119_4535_22 | 26340 | 26870 | + | Ribosomal_S30AE | Ribosom_S30AE_C |
| TC | VatanenT_2016_SRR4305271_bin.2_k119_4535 | VatanenT_2016_SRR4305271_bin.2_k119_4535_23 | 27704 | 28843 | + | 8.A.59.4.1 |
| CAZyme | VatanenT_2016_SRR4305271_bin.2_k119_4535 | VatanenT_2016_SRR4305271_bin.2_k119_4535_24 | 28878 | 29771 | - | CE4 |
Gene ID: VatanenT_2016_SRR4305271_bin.2_k119_4535_20
Type: CAZyme
Location: 23881 - 25371 (+)
Type: CAZyme
Location: 23881 - 25371 (+)
Gene ID: VatanenT_2016_SRR4305271_bin.2_k119_4535_21
Type: STP
Location: 25653 - 26138 (+)
Type: STP
Location: 25653 - 26138 (+)
Gene ID: VatanenT_2016_SRR4305271_bin.2_k119_4535_22
Type: pfam
Location: 26340 - 26870 (+)
Type: pfam
Location: 26340 - 26870 (+)
Gene ID: VatanenT_2016_SRR4305271_bin.2_k119_4535_23
Type: TC
Location: 27704 - 28843 (+)
Type: TC
Location: 27704 - 28843 (+)
Gene ID: VatanenT_2016_SRR4305271_bin.2_k119_4535_24
Type: CAZyme
Location: 28878 - 29771 (-)
Type: CAZyme
Location: 28878 - 29771 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Tissierellales
Family
Sedimentibacteraceae
Genus
Sedimentibacter
Species
Sedimentibacter sp003457065
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.