Cluster: VatanenT_2016_SRR4305271_bin.2_CGC3
🧬 Cluster Details
- Gene Count: 4
- CAZyme Count: 1
- Substrate:
- Genome ID: VatanenT_2016_SRR4305271_bin.2
- Continent: Asia
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | VatanenT_2016_SRR4305271_bin.2_k119_2812 | VatanenT_2016_SRR4305271_bin.2_k119_2812_2 | 1170 | 2300 | - | GT28 |
| TC | VatanenT_2016_SRR4305271_bin.2_k119_2812 | VatanenT_2016_SRR4305271_bin.2_k119_2812_3 | 2325 | 3446 | - | 2.A.103.1.3 |
| pfam | VatanenT_2016_SRR4305271_bin.2_k119_2812 | VatanenT_2016_SRR4305271_bin.2_k119_2812_4 | 3415 | 4788 | - | Mur_ligase_C | Mur_ligase_M | MurD-like_N |
| TC | VatanenT_2016_SRR4305271_bin.2_k119_2812 | VatanenT_2016_SRR4305271_bin.2_k119_2812_5 | 4826 | 5800 | - | 9.B.146.1.6 |
Gene ID: VatanenT_2016_SRR4305271_bin.2_k119_2812_2
Type: CAZyme
Location: 1170 - 2300 (-)
Type: CAZyme
Location: 1170 - 2300 (-)
Gene ID: VatanenT_2016_SRR4305271_bin.2_k119_2812_3
Type: TC
Location: 2325 - 3446 (-)
Type: TC
Location: 2325 - 3446 (-)
Gene ID: VatanenT_2016_SRR4305271_bin.2_k119_2812_4
Type: pfam
Location: 3415 - 4788 (-)
Type: pfam
Location: 3415 - 4788 (-)
Gene ID: VatanenT_2016_SRR4305271_bin.2_k119_2812_5
Type: TC
Location: 4826 - 5800 (-)
Type: TC
Location: 4826 - 5800 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Tissierellales
Family
Sedimentibacteraceae
Genus
Sedimentibacter
Species
Sedimentibacter sp003457065
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.