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Cluster: VatanenT_2016_SRR4305227_bin.9_CGC7

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme VatanenT_2016_SRR4305227_bin.9_k119_6610 VatanenT_2016_SRR4305227_bin.9_k119_6610_2 1451 2635 - GT4
pfam VatanenT_2016_SRR4305227_bin.9_k119_6610 VatanenT_2016_SRR4305227_bin.9_k119_6610_3 2665 3717 - Hexapep | NTP_transferase | NTP_transf_3
CAZyme VatanenT_2016_SRR4305227_bin.9_k119_6610 VatanenT_2016_SRR4305227_bin.9_k119_6610_4 3793 4755 - GH130_9
TC VatanenT_2016_SRR4305227_bin.9_k119_6610 VatanenT_2016_SRR4305227_bin.9_k119_6610_5 5436 6476 - 3.A.1.2.14
TC VatanenT_2016_SRR4305227_bin.9_k119_6610 VatanenT_2016_SRR4305227_bin.9_k119_6610_6 6466 7524 - 3.A.1.2.14
TC VatanenT_2016_SRR4305227_bin.9_k119_6610 VatanenT_2016_SRR4305227_bin.9_k119_6610_7 7521 9098 - 3.A.1.2.23
TC VatanenT_2016_SRR4305227_bin.9_k119_6610 VatanenT_2016_SRR4305227_bin.9_k119_6610_8 9249 10361 - 3.A.1.2.14
TC VatanenT_2016_SRR4305227_bin.9_k119_6610 VatanenT_2016_SRR4305227_bin.9_k119_6610_9 10585 12072 - 8.A.59.2.1
TF VatanenT_2016_SRR4305227_bin.9_k119_6610 VatanenT_2016_SRR4305227_bin.9_k119_6610_10 12069 13694 - HTH_AraC | HTH_AraC
CAZyme VatanenT_2016_SRR4305227_bin.9_k119_6610 VatanenT_2016_SRR4305227_bin.9_k119_6610_11 14273 17149 + GH3
TF VatanenT_2016_SRR4305227_bin.9_k119_6610 VatanenT_2016_SRR4305227_bin.9_k119_6610_12 17776 18912 + 0040266
TC VatanenT_2016_SRR4305227_bin.9_k119_6610 VatanenT_2016_SRR4305227_bin.9_k119_6610_13 19097 20281 + 3.A.1.2.5
TC VatanenT_2016_SRR4305227_bin.9_k119_6610 VatanenT_2016_SRR4305227_bin.9_k119_6610_14 20374 21939 + 3.A.1.2.5
TC VatanenT_2016_SRR4305227_bin.9_k119_6610 VatanenT_2016_SRR4305227_bin.9_k119_6610_15 21951 23123 + 3.A.1.2.5
Gene ID: VatanenT_2016_SRR4305227_bin.9_k119_6610_2
Type: CAZyme
Location: 1451 - 2635 (-)
Gene ID: VatanenT_2016_SRR4305227_bin.9_k119_6610_3
Type: pfam
Location: 2665 - 3717 (-)
Gene ID: VatanenT_2016_SRR4305227_bin.9_k119_6610_4
Type: CAZyme
Location: 3793 - 4755 (-)
Gene ID: VatanenT_2016_SRR4305227_bin.9_k119_6610_5
Type: TC
Location: 5436 - 6476 (-)
Gene ID: VatanenT_2016_SRR4305227_bin.9_k119_6610_6
Type: TC
Location: 6466 - 7524 (-)
Gene ID: VatanenT_2016_SRR4305227_bin.9_k119_6610_7
Type: TC
Location: 7521 - 9098 (-)
Gene ID: VatanenT_2016_SRR4305227_bin.9_k119_6610_8
Type: TC
Location: 9249 - 10361 (-)
Gene ID: VatanenT_2016_SRR4305227_bin.9_k119_6610_9
Type: TC
Location: 10585 - 12072 (-)
Gene ID: VatanenT_2016_SRR4305227_bin.9_k119_6610_10
Type: TF
Location: 12069 - 13694 (-)
Gene ID: VatanenT_2016_SRR4305227_bin.9_k119_6610_11
Type: CAZyme
Location: 14273 - 17149 (+)
Gene ID: VatanenT_2016_SRR4305227_bin.9_k119_6610_12
Type: TF
Location: 17776 - 18912 (+)
Gene ID: VatanenT_2016_SRR4305227_bin.9_k119_6610_13
Type: TC
Location: 19097 - 20281 (+)
Gene ID: VatanenT_2016_SRR4305227_bin.9_k119_6610_14
Type: TC
Location: 20374 - 21939 (+)
Gene ID: VatanenT_2016_SRR4305227_bin.9_k119_6610_15
Type: TC
Location: 21951 - 23123 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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