Cluster: VatanenT_2016_SRR4305227_bin.9_CGC33
🧬 Cluster Details
- Gene Count: 12
- CAZyme Count: 2
- Substrate:
- Genome ID: VatanenT_2016_SRR4305227_bin.9
- Continent: Asia
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | VatanenT_2016_SRR4305227_bin.9_k119_20886 | VatanenT_2016_SRR4305227_bin.9_k119_20886_100 | 103178 | 105625 | - | GH31_4 |
| TC | VatanenT_2016_SRR4305227_bin.9_k119_20886 | VatanenT_2016_SRR4305227_bin.9_k119_20886_101 | 105638 | 106465 | - | 3.A.1.1.41 |
| TC | VatanenT_2016_SRR4305227_bin.9_k119_20886 | VatanenT_2016_SRR4305227_bin.9_k119_20886_102 | 106465 | 107343 | - | 3.A.1.1.7 |
| STP | VatanenT_2016_SRR4305227_bin.9_k119_20886 | VatanenT_2016_SRR4305227_bin.9_k119_20886_103 | 107419 | 108762 | - | SBP_bac_1 |
| TC | VatanenT_2016_SRR4305227_bin.9_k119_20886 | VatanenT_2016_SRR4305227_bin.9_k119_20886_104 | 108919 | 110811 | + | 8.A.59.2.1 |
| TF | VatanenT_2016_SRR4305227_bin.9_k119_20886 | VatanenT_2016_SRR4305227_bin.9_k119_20886_105 | 110808 | 111560 | + | HTH_AraC | HTH_AraC |
| CAZyme | VatanenT_2016_SRR4305227_bin.9_k119_20886 | VatanenT_2016_SRR4305227_bin.9_k119_20886_106 | 111780 | 113219 | - | GH1 |
| TC | VatanenT_2016_SRR4305227_bin.9_k119_20886 | VatanenT_2016_SRR4305227_bin.9_k119_20886_107 | 113235 | 113756 | - | 4.A.1.2.2 |
| pfam | VatanenT_2016_SRR4305227_bin.9_k119_20886 | VatanenT_2016_SRR4305227_bin.9_k119_20886_108 | 113871 | 114635 | - | YdjC |
| TC | VatanenT_2016_SRR4305227_bin.9_k119_20886 | VatanenT_2016_SRR4305227_bin.9_k119_20886_109 | 114650 | 116059 | - | 4.A.1.2.3 |
| pfam | VatanenT_2016_SRR4305227_bin.9_k119_20886 | VatanenT_2016_SRR4305227_bin.9_k119_20886_110 | 116205 | 117041 | - | PRD | PRD | CAT_RBD |
| TC | VatanenT_2016_SRR4305227_bin.9_k119_20886 | VatanenT_2016_SRR4305227_bin.9_k119_20886_111 | 117665 | 118981 | - | 2.A.11.1.2 |
Gene ID: VatanenT_2016_SRR4305227_bin.9_k119_20886_100
Type: CAZyme
Location: 103178 - 105625 (-)
Type: CAZyme
Location: 103178 - 105625 (-)
Gene ID: VatanenT_2016_SRR4305227_bin.9_k119_20886_101
Type: TC
Location: 105638 - 106465 (-)
Type: TC
Location: 105638 - 106465 (-)
Gene ID: VatanenT_2016_SRR4305227_bin.9_k119_20886_102
Type: TC
Location: 106465 - 107343 (-)
Type: TC
Location: 106465 - 107343 (-)
Gene ID: VatanenT_2016_SRR4305227_bin.9_k119_20886_103
Type: STP
Location: 107419 - 108762 (-)
Type: STP
Location: 107419 - 108762 (-)
Gene ID: VatanenT_2016_SRR4305227_bin.9_k119_20886_104
Type: TC
Location: 108919 - 110811 (+)
Type: TC
Location: 108919 - 110811 (+)
Gene ID: VatanenT_2016_SRR4305227_bin.9_k119_20886_105
Type: TF
Location: 110808 - 111560 (+)
Type: TF
Location: 110808 - 111560 (+)
Gene ID: VatanenT_2016_SRR4305227_bin.9_k119_20886_106
Type: CAZyme
Location: 111780 - 113219 (-)
Type: CAZyme
Location: 111780 - 113219 (-)
Gene ID: VatanenT_2016_SRR4305227_bin.9_k119_20886_107
Type: TC
Location: 113235 - 113756 (-)
Type: TC
Location: 113235 - 113756 (-)
Gene ID: VatanenT_2016_SRR4305227_bin.9_k119_20886_108
Type: pfam
Location: 113871 - 114635 (-)
Type: pfam
Location: 113871 - 114635 (-)
Gene ID: VatanenT_2016_SRR4305227_bin.9_k119_20886_109
Type: TC
Location: 114650 - 116059 (-)
Type: TC
Location: 114650 - 116059 (-)
Gene ID: VatanenT_2016_SRR4305227_bin.9_k119_20886_110
Type: pfam
Location: 116205 - 117041 (-)
Type: pfam
Location: 116205 - 117041 (-)
Gene ID: VatanenT_2016_SRR4305227_bin.9_k119_20886_111
Type: TC
Location: 117665 - 118981 (-)
Type: TC
Location: 117665 - 118981 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Acutalibacteraceae
Genus
Caproiciproducens
Species
Caproiciproducens sp900546895
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.