Cluster: VatanenT_2016_SRR4305227_bin.9_CGC3
🧬 Cluster Details
- Gene Count: 13
- CAZyme Count: 3
- Substrate:
- Genome ID: VatanenT_2016_SRR4305227_bin.9
- Continent: Asia
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | VatanenT_2016_SRR4305227_bin.9_k119_4787 | VatanenT_2016_SRR4305227_bin.9_k119_4787_7 | 5653 | 6774 | - | GT28 |
| pfam | VatanenT_2016_SRR4305227_bin.9_k119_4787 | VatanenT_2016_SRR4305227_bin.9_k119_4787_8 | 7058 | 8710 | + | VanW | G5 | PG_binding_4 |
| CAZyme | VatanenT_2016_SRR4305227_bin.9_k119_4787 | VatanenT_2016_SRR4305227_bin.9_k119_4787_9 | 8899 | 9888 | + | GT2 |
| pfam | VatanenT_2016_SRR4305227_bin.9_k119_4787 | VatanenT_2016_SRR4305227_bin.9_k119_4787_10 | 9913 | 10962 | + | LPG_synthase_TM |
| pfam | VatanenT_2016_SRR4305227_bin.9_k119_4787 | VatanenT_2016_SRR4305227_bin.9_k119_4787_11 | 11049 | 12947 | + | CN_hydrolase | NAD_synthase |
| CAZyme | VatanenT_2016_SRR4305227_bin.9_k119_4787 | VatanenT_2016_SRR4305227_bin.9_k119_4787_12 | 13225 | 14052 | - | GH23 |
| TC | VatanenT_2016_SRR4305227_bin.9_k119_4787 | VatanenT_2016_SRR4305227_bin.9_k119_4787_13 | 14269 | 14712 | + | 9.A.11.1.1 |
| TC | VatanenT_2016_SRR4305227_bin.9_k119_4787 | VatanenT_2016_SRR4305227_bin.9_k119_4787_14 | 14730 | 15749 | + | 9.A.11.1.1 |
| pfam | VatanenT_2016_SRR4305227_bin.9_k119_4787 | VatanenT_2016_SRR4305227_bin.9_k119_4787_15 | 15790 | 17313 | - | PGM_PMM_I | PGM_PMM_II | PGM_PMM_III |
| TC | VatanenT_2016_SRR4305227_bin.9_k119_4787 | VatanenT_2016_SRR4305227_bin.9_k119_4787_16 | 17329 | 18063 | + | 3.A.1.122.2 |
| pfam | VatanenT_2016_SRR4305227_bin.9_k119_4787 | VatanenT_2016_SRR4305227_bin.9_k119_4787_17 | 18053 | 18694 | - | Acetyltransf_1 | Acetyltransf_7 |
| NULL(UNKNOWN) | VatanenT_2016_SRR4305227_bin.9_k119_4787 | VatanenT_2016_SRR4305227_bin.9_k119_4787_18 | 18909 | 19166 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | VatanenT_2016_SRR4305227_bin.9_k119_4787 | VatanenT_2016_SRR4305227_bin.9_k119_4787_19 | 19245 | 20195 | + | 3.A.11.1.4 |
Gene ID: VatanenT_2016_SRR4305227_bin.9_k119_4787_7
Type: CAZyme
Location: 5653 - 6774 (-)
Type: CAZyme
Location: 5653 - 6774 (-)
Gene ID: VatanenT_2016_SRR4305227_bin.9_k119_4787_8
Type: pfam
Location: 7058 - 8710 (+)
Type: pfam
Location: 7058 - 8710 (+)
Gene ID: VatanenT_2016_SRR4305227_bin.9_k119_4787_9
Type: CAZyme
Location: 8899 - 9888 (+)
Type: CAZyme
Location: 8899 - 9888 (+)
Gene ID: VatanenT_2016_SRR4305227_bin.9_k119_4787_10
Type: pfam
Location: 9913 - 10962 (+)
Type: pfam
Location: 9913 - 10962 (+)
Gene ID: VatanenT_2016_SRR4305227_bin.9_k119_4787_11
Type: pfam
Location: 11049 - 12947 (+)
Type: pfam
Location: 11049 - 12947 (+)
Gene ID: VatanenT_2016_SRR4305227_bin.9_k119_4787_12
Type: CAZyme
Location: 13225 - 14052 (-)
Type: CAZyme
Location: 13225 - 14052 (-)
Gene ID: VatanenT_2016_SRR4305227_bin.9_k119_4787_13
Type: TC
Location: 14269 - 14712 (+)
Type: TC
Location: 14269 - 14712 (+)
Gene ID: VatanenT_2016_SRR4305227_bin.9_k119_4787_14
Type: TC
Location: 14730 - 15749 (+)
Type: TC
Location: 14730 - 15749 (+)
Gene ID: VatanenT_2016_SRR4305227_bin.9_k119_4787_15
Type: pfam
Location: 15790 - 17313 (-)
Type: pfam
Location: 15790 - 17313 (-)
Gene ID: VatanenT_2016_SRR4305227_bin.9_k119_4787_16
Type: TC
Location: 17329 - 18063 (+)
Type: TC
Location: 17329 - 18063 (+)
Gene ID: VatanenT_2016_SRR4305227_bin.9_k119_4787_17
Type: pfam
Location: 18053 - 18694 (-)
Type: pfam
Location: 18053 - 18694 (-)
Gene ID: VatanenT_2016_SRR4305227_bin.9_k119_4787_18
Type:
Location: 18909 - 19166 (+)
Type:
Location: 18909 - 19166 (+)
Gene ID: VatanenT_2016_SRR4305227_bin.9_k119_4787_19
Type: TC
Location: 19245 - 20195 (+)
Type: TC
Location: 19245 - 20195 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Acutalibacteraceae
Genus
Caproiciproducens
Species
Caproiciproducens sp900546895
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.