Cluster: VatanenT_2016_SRR4305227_bin.9_CGC12
🧬 Cluster Details
- Gene Count: 8
- CAZyme Count: 3
- Substrate: alpha-glucan
- Genome ID: VatanenT_2016_SRR4305227_bin.9
- CGC Family ID: CGCFAM_00004
- Continent: Asia
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | VatanenT_2016_SRR4305227_bin.9_k119_8868 | VatanenT_2016_SRR4305227_bin.9_k119_8868_31 | 25260 | 26537 | - | GH3 |
| CAZyme | VatanenT_2016_SRR4305227_bin.9_k119_8868 | VatanenT_2016_SRR4305227_bin.9_k119_8868_32 | 26587 | 28020 | - | GT5 |
| pfam | VatanenT_2016_SRR4305227_bin.9_k119_8868 | VatanenT_2016_SRR4305227_bin.9_k119_8868_33 | 28060 | 29175 | - | NTP_transferase | Hexapep_GlmU |
| pfam | VatanenT_2016_SRR4305227_bin.9_k119_8868 | VatanenT_2016_SRR4305227_bin.9_k119_8868_34 | 29175 | 30398 | - | NTP_transferase | Hexapep_GlmU |
| CAZyme | VatanenT_2016_SRR4305227_bin.9_k119_8868 | VatanenT_2016_SRR4305227_bin.9_k119_8868_35 | 30424 | 32394 | - | CBM48 | GH13_9 |
| pfam | VatanenT_2016_SRR4305227_bin.9_k119_8868 | VatanenT_2016_SRR4305227_bin.9_k119_8868_36 | 32974 | 33801 | + | PRD | PRD | CAT_RBD |
| TC | VatanenT_2016_SRR4305227_bin.9_k119_8868 | VatanenT_2016_SRR4305227_bin.9_k119_8868_37 | 33848 | 35317 | + | 4.A.1.1.2 |
| TC | VatanenT_2016_SRR4305227_bin.9_k119_8868 | VatanenT_2016_SRR4305227_bin.9_k119_8868_38 | 35410 | 35889 | + | 4.A.1.1.1 |
Gene ID: VatanenT_2016_SRR4305227_bin.9_k119_8868_31
Type: CAZyme
Location: 25260 - 26537 (-)
Type: CAZyme
Location: 25260 - 26537 (-)
Gene ID: VatanenT_2016_SRR4305227_bin.9_k119_8868_32
Type: CAZyme
Location: 26587 - 28020 (-)
Type: CAZyme
Location: 26587 - 28020 (-)
Gene ID: VatanenT_2016_SRR4305227_bin.9_k119_8868_33
Type: pfam
Location: 28060 - 29175 (-)
Type: pfam
Location: 28060 - 29175 (-)
Gene ID: VatanenT_2016_SRR4305227_bin.9_k119_8868_34
Type: pfam
Location: 29175 - 30398 (-)
Type: pfam
Location: 29175 - 30398 (-)
Gene ID: VatanenT_2016_SRR4305227_bin.9_k119_8868_35
Type: CAZyme
Location: 30424 - 32394 (-)
Type: CAZyme
Location: 30424 - 32394 (-)
Gene ID: VatanenT_2016_SRR4305227_bin.9_k119_8868_36
Type: pfam
Location: 32974 - 33801 (+)
Type: pfam
Location: 32974 - 33801 (+)
Gene ID: VatanenT_2016_SRR4305227_bin.9_k119_8868_37
Type: TC
Location: 33848 - 35317 (+)
Type: TC
Location: 33848 - 35317 (+)
Gene ID: VatanenT_2016_SRR4305227_bin.9_k119_8868_38
Type: TC
Location: 35410 - 35889 (+)
Type: TC
Location: 35410 - 35889 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Acutalibacteraceae
Genus
Caproiciproducens
Species
Caproiciproducens sp900546895
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.