Cluster: TapiainenT_2019_SRR10527831_bin.4_CGC9
🧬 Cluster Details
- Gene Count: 11
- CAZyme Count: 1
- Substrate:
- Genome ID: TapiainenT_2019_SRR10527831_bin.4
- Continent: Europe
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | TapiainenT_2019_SRR10527831_bin.4_k141_15862 | TapiainenT_2019_SRR10527831_bin.4_k141_15862_6 | 5725 | 7167 | + | 3.A.1.8.1 |
| TC | TapiainenT_2019_SRR10527831_bin.4_k141_15862 | TapiainenT_2019_SRR10527831_bin.4_k141_15862_7 | 7171 | 8241 | + | 3.A.1.1.3 |
| pfam | TapiainenT_2019_SRR10527831_bin.4_k141_15862 | TapiainenT_2019_SRR10527831_bin.4_k141_15862_8 | 8671 | 9954 | + | HGD-D |
| TC | TapiainenT_2019_SRR10527831_bin.4_k141_15862 | TapiainenT_2019_SRR10527831_bin.4_k141_15862_9 | 10139 | 11749 | + | 3.A.1.5.11 |
| TC | TapiainenT_2019_SRR10527831_bin.4_k141_15862 | TapiainenT_2019_SRR10527831_bin.4_k141_15862_10 | 11871 | 12791 | + | 3.A.1.5.11 |
| TC | TapiainenT_2019_SRR10527831_bin.4_k141_15862 | TapiainenT_2019_SRR10527831_bin.4_k141_15862_11 | 12788 | 13618 | + | 3.A.1.5.39 |
| TC | TapiainenT_2019_SRR10527831_bin.4_k141_15862 | TapiainenT_2019_SRR10527831_bin.4_k141_15862_12 | 13622 | 14617 | + | 3.A.1.5.37 |
| TC | TapiainenT_2019_SRR10527831_bin.4_k141_15862 | TapiainenT_2019_SRR10527831_bin.4_k141_15862_13 | 14607 | 15392 | + | 3.A.1.5.36 |
| pfam | TapiainenT_2019_SRR10527831_bin.4_k141_15862 | TapiainenT_2019_SRR10527831_bin.4_k141_15862_14 | 15470 | 16633 | + | HGD-D |
| pfam | TapiainenT_2019_SRR10527831_bin.4_k141_15862 | TapiainenT_2019_SRR10527831_bin.4_k141_15862_15 | 16684 | 17448 | + | BcrAD_BadFG |
| CAZyme | TapiainenT_2019_SRR10527831_bin.4_k141_15862 | TapiainenT_2019_SRR10527831_bin.4_k141_15862_16 | 17463 | 18680 | + | GT4 |
Gene ID: TapiainenT_2019_SRR10527831_bin.4_k141_15862_6
Type: TC
Location: 5725 - 7167 (+)
Type: TC
Location: 5725 - 7167 (+)
Gene ID: TapiainenT_2019_SRR10527831_bin.4_k141_15862_7
Type: TC
Location: 7171 - 8241 (+)
Type: TC
Location: 7171 - 8241 (+)
Gene ID: TapiainenT_2019_SRR10527831_bin.4_k141_15862_8
Type: pfam
Location: 8671 - 9954 (+)
Type: pfam
Location: 8671 - 9954 (+)
Gene ID: TapiainenT_2019_SRR10527831_bin.4_k141_15862_9
Type: TC
Location: 10139 - 11749 (+)
Type: TC
Location: 10139 - 11749 (+)
Gene ID: TapiainenT_2019_SRR10527831_bin.4_k141_15862_10
Type: TC
Location: 11871 - 12791 (+)
Type: TC
Location: 11871 - 12791 (+)
Gene ID: TapiainenT_2019_SRR10527831_bin.4_k141_15862_11
Type: TC
Location: 12788 - 13618 (+)
Type: TC
Location: 12788 - 13618 (+)
Gene ID: TapiainenT_2019_SRR10527831_bin.4_k141_15862_12
Type: TC
Location: 13622 - 14617 (+)
Type: TC
Location: 13622 - 14617 (+)
Gene ID: TapiainenT_2019_SRR10527831_bin.4_k141_15862_13
Type: TC
Location: 14607 - 15392 (+)
Type: TC
Location: 14607 - 15392 (+)
Gene ID: TapiainenT_2019_SRR10527831_bin.4_k141_15862_14
Type: pfam
Location: 15470 - 16633 (+)
Type: pfam
Location: 15470 - 16633 (+)
Gene ID: TapiainenT_2019_SRR10527831_bin.4_k141_15862_15
Type: pfam
Location: 16684 - 17448 (+)
Type: pfam
Location: 16684 - 17448 (+)
Gene ID: TapiainenT_2019_SRR10527831_bin.4_k141_15862_16
Type: CAZyme
Location: 17463 - 18680 (+)
Type: CAZyme
Location: 17463 - 18680 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| TapiainenT_2019_SRR10527831_bin.4_k141_15862_9 | vegan > omnivore | 2.54506 | 0.02258 |
| TapiainenT_2019_SRR10527831_bin.4_k141_15862_10 | vegan > omnivore | 1.98077 | 0.02258 |
| TapiainenT_2019_SRR10527831_bin.4_k141_15862_11 | vegan > omnivore | 1.90732 | 0.02258 |
| TapiainenT_2019_SRR10527831_bin.4_k141_15862_13 | vegan > omnivore | 1.99169 | 0.02258 |
| TapiainenT_2019_SRR10527831_bin.4_k141_15862_16 | vegan > omnivore | 1.14960 | 0.02258 |