Cluster: TapiainenT_2019_SRR10527826_bin.3_CGC7
🧬 Cluster Details
- Gene Count: 10
- CAZyme Count: 3
- Substrate:
- Genome ID: TapiainenT_2019_SRR10527826_bin.3
- Continent: Europe
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | TapiainenT_2019_SRR10527826_bin.3_k141_5546 | TapiainenT_2019_SRR10527826_bin.3_k141_5546_7 | 5363 | 5701 | - | 4.A.3.1.2 |
| TF | TapiainenT_2019_SRR10527826_bin.3_k141_5546 | TapiainenT_2019_SRR10527826_bin.3_k141_5546_8 | 5916 | 6920 | - | LacI |
| TC | TapiainenT_2019_SRR10527826_bin.3_k141_5546 | TapiainenT_2019_SRR10527826_bin.3_k141_5546_9 | 7278 | 9053 | + | 4.A.3.1.1 |
| CAZyme | TapiainenT_2019_SRR10527826_bin.3_k141_5546 | TapiainenT_2019_SRR10527826_bin.3_k141_5546_10 | 9120 | 10559 | + | GH1 |
| TF | TapiainenT_2019_SRR10527826_bin.3_k141_5546 | TapiainenT_2019_SRR10527826_bin.3_k141_5546_11 | 10824 | 11861 | - | LacI |
| CAZyme | TapiainenT_2019_SRR10527826_bin.3_k141_5546 | TapiainenT_2019_SRR10527826_bin.3_k141_5546_12 | 12203 | 13645 | + | GH1 |
| TC | TapiainenT_2019_SRR10527826_bin.3_k141_5546 | TapiainenT_2019_SRR10527826_bin.3_k141_5546_13 | 13822 | 15582 | + | 4.A.3.1.1 |
| TF | TapiainenT_2019_SRR10527826_bin.3_k141_5546 | TapiainenT_2019_SRR10527826_bin.3_k141_5546_14 | 15996 | 17006 | - | LacI |
| TC | TapiainenT_2019_SRR10527826_bin.3_k141_5546 | TapiainenT_2019_SRR10527826_bin.3_k141_5546_15 | 17282 | 19060 | + | 4.A.3.1.1 |
| CAZyme | TapiainenT_2019_SRR10527826_bin.3_k141_5546 | TapiainenT_2019_SRR10527826_bin.3_k141_5546_16 | 19136 | 20557 | + | GH1 |
Gene ID: TapiainenT_2019_SRR10527826_bin.3_k141_5546_7
Type: TC
Location: 5363 - 5701 (-)
Type: TC
Location: 5363 - 5701 (-)
Gene ID: TapiainenT_2019_SRR10527826_bin.3_k141_5546_8
Type: TF
Location: 5916 - 6920 (-)
Type: TF
Location: 5916 - 6920 (-)
Gene ID: TapiainenT_2019_SRR10527826_bin.3_k141_5546_9
Type: TC
Location: 7278 - 9053 (+)
Type: TC
Location: 7278 - 9053 (+)
Gene ID: TapiainenT_2019_SRR10527826_bin.3_k141_5546_10
Type: CAZyme
Location: 9120 - 10559 (+)
Type: CAZyme
Location: 9120 - 10559 (+)
Gene ID: TapiainenT_2019_SRR10527826_bin.3_k141_5546_11
Type: TF
Location: 10824 - 11861 (-)
Type: TF
Location: 10824 - 11861 (-)
Gene ID: TapiainenT_2019_SRR10527826_bin.3_k141_5546_12
Type: CAZyme
Location: 12203 - 13645 (+)
Type: CAZyme
Location: 12203 - 13645 (+)
Gene ID: TapiainenT_2019_SRR10527826_bin.3_k141_5546_13
Type: TC
Location: 13822 - 15582 (+)
Type: TC
Location: 13822 - 15582 (+)
Gene ID: TapiainenT_2019_SRR10527826_bin.3_k141_5546_14
Type: TF
Location: 15996 - 17006 (-)
Type: TF
Location: 15996 - 17006 (-)
Gene ID: TapiainenT_2019_SRR10527826_bin.3_k141_5546_15
Type: TC
Location: 17282 - 19060 (+)
Type: TC
Location: 17282 - 19060 (+)
Gene ID: TapiainenT_2019_SRR10527826_bin.3_k141_5546_16
Type: CAZyme
Location: 19136 - 20557 (+)
Type: CAZyme
Location: 19136 - 20557 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| TapiainenT_2019_SRR10527826_bin.3_k141_5546_11 | vegetarian > omnivore | 1.00473 | 0.00969 |