Cluster: TapiainenT_2019_SRR10527826_bin.3_CGC12
🧬 Cluster Details
- Gene Count: 4
- CAZyme Count: 1
- Substrate:
- Genome ID: TapiainenT_2019_SRR10527826_bin.3
- Continent: Europe
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | TapiainenT_2019_SRR10527826_bin.3_k141_20650 | TapiainenT_2019_SRR10527826_bin.3_k141_20650_1 | 224 | 1486 | - | 2.A.55.3.6 |
| STP | TapiainenT_2019_SRR10527826_bin.3_k141_20650 | TapiainenT_2019_SRR10527826_bin.3_k141_20650_2 | 1495 | 3339 | - | CBS | CBS |
| NULL(UNKNOWN) | TapiainenT_2019_SRR10527826_bin.3_k141_20650 | TapiainenT_2019_SRR10527826_bin.3_k141_20650_3 | 3378 | 3773 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | TapiainenT_2019_SRR10527826_bin.3_k141_20650 | TapiainenT_2019_SRR10527826_bin.3_k141_20650_4 | 3635 | 5041 | - | CE4 |
Gene ID: TapiainenT_2019_SRR10527826_bin.3_k141_20650_1
Type: TC
Location: 224 - 1486 (-)
Type: TC
Location: 224 - 1486 (-)
Gene ID: TapiainenT_2019_SRR10527826_bin.3_k141_20650_2
Type: STP
Location: 1495 - 3339 (-)
Type: STP
Location: 1495 - 3339 (-)
Gene ID: TapiainenT_2019_SRR10527826_bin.3_k141_20650_3
Type:
Location: 3378 - 3773 (+)
Type:
Location: 3378 - 3773 (+)
Gene ID: TapiainenT_2019_SRR10527826_bin.3_k141_20650_4
Type: CAZyme
Location: 3635 - 5041 (-)
Type: CAZyme
Location: 3635 - 5041 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.