dbCAN Logo

Cluster: ShaoY_2019_ERR3406288_bin.2_CGC7

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC ShaoY_2019_ERR3406288_bin.2_k141_5248 ShaoY_2019_ERR3406288_bin.2_k141_5248_13 10671 12038 + 2.A.66.1.32
TC ShaoY_2019_ERR3406288_bin.2_k141_5248 ShaoY_2019_ERR3406288_bin.2_k141_5248_14 12144 13595 + 3.A.18.1.1
pfam ShaoY_2019_ERR3406288_bin.2_k141_5248 ShaoY_2019_ERR3406288_bin.2_k141_5248_15 13797 14636 + PRD | PRD | CAT_RBD
TC ShaoY_2019_ERR3406288_bin.2_k141_5248 ShaoY_2019_ERR3406288_bin.2_k141_5248_16 14651 16627 + 4.A.1.2.6
CAZyme ShaoY_2019_ERR3406288_bin.2_k141_5248 ShaoY_2019_ERR3406288_bin.2_k141_5248_17 16687 18114 + GH1
CAZyme ShaoY_2019_ERR3406288_bin.2_k141_5248 ShaoY_2019_ERR3406288_bin.2_k141_5248_18 18136 19602 + GH1
Gene ID: ShaoY_2019_ERR3406288_bin.2_k141_5248_13
Type: TC
Location: 10671 - 12038 (+)
Gene ID: ShaoY_2019_ERR3406288_bin.2_k141_5248_14
Type: TC
Location: 12144 - 13595 (+)
Gene ID: ShaoY_2019_ERR3406288_bin.2_k141_5248_15
Type: pfam
Location: 13797 - 14636 (+)
Gene ID: ShaoY_2019_ERR3406288_bin.2_k141_5248_16
Type: TC
Location: 14651 - 16627 (+)
Gene ID: ShaoY_2019_ERR3406288_bin.2_k141_5248_17
Type: CAZyme
Location: 16687 - 18114 (+)
Gene ID: ShaoY_2019_ERR3406288_bin.2_k141_5248_18
Type: CAZyme
Location: 18136 - 19602 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

Loading chart...

No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

← Back to Cluster List