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Cluster: ShaoY_2019_ERR3406288_bin.2_CGC30

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC ShaoY_2019_ERR3406288_bin.2_k141_18657 ShaoY_2019_ERR3406288_bin.2_k141_18657_33 34902 35759 - 3.A.1.132.3
pfam ShaoY_2019_ERR3406288_bin.2_k141_18657 ShaoY_2019_ERR3406288_bin.2_k141_18657_34 35876 36310 + GtrA_DPMS_TM
STP ShaoY_2019_ERR3406288_bin.2_k141_18657 ShaoY_2019_ERR3406288_bin.2_k141_18657_35 36346 38217 - HATPase_c | HisKA
TC ShaoY_2019_ERR3406288_bin.2_k141_18657 ShaoY_2019_ERR3406288_bin.2_k141_18657_36 38400 38816 + 3.A.7.19.1
CAZyme ShaoY_2019_ERR3406288_bin.2_k141_18657 ShaoY_2019_ERR3406288_bin.2_k141_18657_37 38861 40759 - GH13_39
CAZyme ShaoY_2019_ERR3406288_bin.2_k141_18657 ShaoY_2019_ERR3406288_bin.2_k141_18657_38 40731 43187 - GT35
CAZyme ShaoY_2019_ERR3406288_bin.2_k141_18657 ShaoY_2019_ERR3406288_bin.2_k141_18657_39 43201 44640 - GT5
pfam ShaoY_2019_ERR3406288_bin.2_k141_18657 ShaoY_2019_ERR3406288_bin.2_k141_18657_40 44659 45789 - NTP_transferase | Hexapep_GlmU
pfam ShaoY_2019_ERR3406288_bin.2_k141_18657 ShaoY_2019_ERR3406288_bin.2_k141_18657_41 45805 46956 - NTP_transferase | Hexapep_GlmU
CAZyme ShaoY_2019_ERR3406288_bin.2_k141_18657 ShaoY_2019_ERR3406288_bin.2_k141_18657_42 46978 48606 - GH13_9
TC ShaoY_2019_ERR3406288_bin.2_k141_18657 ShaoY_2019_ERR3406288_bin.2_k141_18657_43 49171 50124 - 8.A.21.2.1
pfam ShaoY_2019_ERR3406288_bin.2_k141_18657 ShaoY_2019_ERR3406288_bin.2_k141_18657_44 50145 50606 - NfeD
pfam ShaoY_2019_ERR3406288_bin.2_k141_18657 ShaoY_2019_ERR3406288_bin.2_k141_18657_45 50676 52199 - Carb_kinase | YjeF_N
TC ShaoY_2019_ERR3406288_bin.2_k141_18657 ShaoY_2019_ERR3406288_bin.2_k141_18657_46 52324 54471 - 9.B.74.1.1
Gene ID: ShaoY_2019_ERR3406288_bin.2_k141_18657_33
Type: TC
Location: 34902 - 35759 (-)
Gene ID: ShaoY_2019_ERR3406288_bin.2_k141_18657_34
Type: pfam
Location: 35876 - 36310 (+)
Gene ID: ShaoY_2019_ERR3406288_bin.2_k141_18657_35
Type: STP
Location: 36346 - 38217 (-)
Gene ID: ShaoY_2019_ERR3406288_bin.2_k141_18657_36
Type: TC
Location: 38400 - 38816 (+)
Gene ID: ShaoY_2019_ERR3406288_bin.2_k141_18657_37
Type: CAZyme
Location: 38861 - 40759 (-)
Gene ID: ShaoY_2019_ERR3406288_bin.2_k141_18657_38
Type: CAZyme
Location: 40731 - 43187 (-)
Gene ID: ShaoY_2019_ERR3406288_bin.2_k141_18657_39
Type: CAZyme
Location: 43201 - 44640 (-)
Gene ID: ShaoY_2019_ERR3406288_bin.2_k141_18657_40
Type: pfam
Location: 44659 - 45789 (-)
Gene ID: ShaoY_2019_ERR3406288_bin.2_k141_18657_41
Type: pfam
Location: 45805 - 46956 (-)
Gene ID: ShaoY_2019_ERR3406288_bin.2_k141_18657_42
Type: CAZyme
Location: 46978 - 48606 (-)
Gene ID: ShaoY_2019_ERR3406288_bin.2_k141_18657_43
Type: TC
Location: 49171 - 50124 (-)
Gene ID: ShaoY_2019_ERR3406288_bin.2_k141_18657_44
Type: pfam
Location: 50145 - 50606 (-)
Gene ID: ShaoY_2019_ERR3406288_bin.2_k141_18657_45
Type: pfam
Location: 50676 - 52199 (-)
Gene ID: ShaoY_2019_ERR3406288_bin.2_k141_18657_46
Type: TC
Location: 52324 - 54471 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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