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Cluster: ShaoY_2019_ERR3406288_bin.2_CGC28

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC ShaoY_2019_ERR3406288_bin.2_k141_17730 ShaoY_2019_ERR3406288_bin.2_k141_17730_3 731 1327 + 1.A.34.1.2
NULL(UNKNOWN) ShaoY_2019_ERR3406288_bin.2_k141_17730 ShaoY_2019_ERR3406288_bin.2_k141_17730_4 1435 2103 + NULL(UNKNOWN)
[View Structural Homologs]
CAZyme ShaoY_2019_ERR3406288_bin.2_k141_17730 ShaoY_2019_ERR3406288_bin.2_k141_17730_5 2162 3283 - GT28
TC ShaoY_2019_ERR3406288_bin.2_k141_17730 ShaoY_2019_ERR3406288_bin.2_k141_17730_6 3435 4727 + 9.A.5.2.2
NULL(UNKNOWN) ShaoY_2019_ERR3406288_bin.2_k141_17730 ShaoY_2019_ERR3406288_bin.2_k141_17730_7 4874 5950 + NULL(UNKNOWN)
[View Structural Homologs]
TC ShaoY_2019_ERR3406288_bin.2_k141_17730 ShaoY_2019_ERR3406288_bin.2_k141_17730_8 6240 8900 + 3.A.3.2.21
Gene ID: ShaoY_2019_ERR3406288_bin.2_k141_17730_3
Type: TC
Location: 731 - 1327 (+)
Gene ID: ShaoY_2019_ERR3406288_bin.2_k141_17730_4
Type:
Location: 1435 - 2103 (+)
Gene ID: ShaoY_2019_ERR3406288_bin.2_k141_17730_5
Type: CAZyme
Location: 2162 - 3283 (-)
Gene ID: ShaoY_2019_ERR3406288_bin.2_k141_17730_6
Type: TC
Location: 3435 - 4727 (+)
Gene ID: ShaoY_2019_ERR3406288_bin.2_k141_17730_7
Type:
Location: 4874 - 5950 (+)
Gene ID: ShaoY_2019_ERR3406288_bin.2_k141_17730_8
Type: TC
Location: 6240 - 8900 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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