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Cluster: ShaoY_2019_ERR3406288_bin.2_CGC20

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC ShaoY_2019_ERR3406288_bin.2_k141_13884 ShaoY_2019_ERR3406288_bin.2_k141_13884_60 59091 59828 + 8.A.3.2.4
TC ShaoY_2019_ERR3406288_bin.2_k141_13884 ShaoY_2019_ERR3406288_bin.2_k141_13884_61 59846 60592 + 8.A.3.2.1
TC ShaoY_2019_ERR3406288_bin.2_k141_13884 ShaoY_2019_ERR3406288_bin.2_k141_13884_62 60632 62524 + 9.B.18.2.1
TC ShaoY_2019_ERR3406288_bin.2_k141_13884 ShaoY_2019_ERR3406288_bin.2_k141_13884_63 62517 63119 + 9.B.18.1.3
STP ShaoY_2019_ERR3406288_bin.2_k141_13884 ShaoY_2019_ERR3406288_bin.2_k141_13884_64 63132 64268 + Aminotran_1_2
CAZyme ShaoY_2019_ERR3406288_bin.2_k141_13884 ShaoY_2019_ERR3406288_bin.2_k141_13884_65 64358 65458 + GT4
CAZyme ShaoY_2019_ERR3406288_bin.2_k141_13884 ShaoY_2019_ERR3406288_bin.2_k141_13884_66 65488 66600 + GT4
CAZyme ShaoY_2019_ERR3406288_bin.2_k141_13884 ShaoY_2019_ERR3406288_bin.2_k141_13884_67 66615 67496 + GT2
TC ShaoY_2019_ERR3406288_bin.2_k141_13884 ShaoY_2019_ERR3406288_bin.2_k141_13884_68 67527 68576 + 9.B.183.1.9
CAZyme ShaoY_2019_ERR3406288_bin.2_k141_13884 ShaoY_2019_ERR3406288_bin.2_k141_13884_69 68597 69346 + GT32
pfam ShaoY_2019_ERR3406288_bin.2_k141_13884 ShaoY_2019_ERR3406288_bin.2_k141_13884_70 69360 69974 + Hexapep | Hexapep_2
CAZyme ShaoY_2019_ERR3406288_bin.2_k141_13884 ShaoY_2019_ERR3406288_bin.2_k141_13884_71 70002 71192 + GT4
pfam ShaoY_2019_ERR3406288_bin.2_k141_13884 ShaoY_2019_ERR3406288_bin.2_k141_13884_72 71217 72329 + PS_pyruv_trans
CAZyme ShaoY_2019_ERR3406288_bin.2_k141_13884 ShaoY_2019_ERR3406288_bin.2_k141_13884_73 72368 73555 + GT4
CAZyme ShaoY_2019_ERR3406288_bin.2_k141_13884 ShaoY_2019_ERR3406288_bin.2_k141_13884_74 73570 74556 + GT2
pfam ShaoY_2019_ERR3406288_bin.2_k141_13884 ShaoY_2019_ERR3406288_bin.2_k141_13884_75 74576 75649 + Epimerase | Polysacc_synt_2 | RmlD_sub_bind | GDP_Man_Dehyd
pfam ShaoY_2019_ERR3406288_bin.2_k141_13884 ShaoY_2019_ERR3406288_bin.2_k141_13884_76 75736 76665 + Epimerase | Polysacc_synt_2 | RmlD_sub_bind | GDP_Man_Dehyd
CAZyme ShaoY_2019_ERR3406288_bin.2_k141_13884 ShaoY_2019_ERR3406288_bin.2_k141_13884_77 76684 77556 + GT11
pfam ShaoY_2019_ERR3406288_bin.2_k141_13884 ShaoY_2019_ERR3406288_bin.2_k141_13884_78 77598 78929 + Polysacc_synt
CAZyme ShaoY_2019_ERR3406288_bin.2_k141_13884 ShaoY_2019_ERR3406288_bin.2_k141_13884_79 78883 79662 + GT6
Gene ID: ShaoY_2019_ERR3406288_bin.2_k141_13884_60
Type: TC
Location: 59091 - 59828 (+)
Gene ID: ShaoY_2019_ERR3406288_bin.2_k141_13884_61
Type: TC
Location: 59846 - 60592 (+)
Gene ID: ShaoY_2019_ERR3406288_bin.2_k141_13884_62
Type: TC
Location: 60632 - 62524 (+)
Gene ID: ShaoY_2019_ERR3406288_bin.2_k141_13884_63
Type: TC
Location: 62517 - 63119 (+)
Gene ID: ShaoY_2019_ERR3406288_bin.2_k141_13884_64
Type: STP
Location: 63132 - 64268 (+)
Gene ID: ShaoY_2019_ERR3406288_bin.2_k141_13884_65
Type: CAZyme
Location: 64358 - 65458 (+)
Gene ID: ShaoY_2019_ERR3406288_bin.2_k141_13884_66
Type: CAZyme
Location: 65488 - 66600 (+)
Gene ID: ShaoY_2019_ERR3406288_bin.2_k141_13884_67
Type: CAZyme
Location: 66615 - 67496 (+)
Gene ID: ShaoY_2019_ERR3406288_bin.2_k141_13884_68
Type: TC
Location: 67527 - 68576 (+)
Gene ID: ShaoY_2019_ERR3406288_bin.2_k141_13884_69
Type: CAZyme
Location: 68597 - 69346 (+)
Gene ID: ShaoY_2019_ERR3406288_bin.2_k141_13884_70
Type: pfam
Location: 69360 - 69974 (+)
Gene ID: ShaoY_2019_ERR3406288_bin.2_k141_13884_71
Type: CAZyme
Location: 70002 - 71192 (+)
Gene ID: ShaoY_2019_ERR3406288_bin.2_k141_13884_72
Type: pfam
Location: 71217 - 72329 (+)
Gene ID: ShaoY_2019_ERR3406288_bin.2_k141_13884_73
Type: CAZyme
Location: 72368 - 73555 (+)
Gene ID: ShaoY_2019_ERR3406288_bin.2_k141_13884_74
Type: CAZyme
Location: 73570 - 74556 (+)
Gene ID: ShaoY_2019_ERR3406288_bin.2_k141_13884_75
Type: pfam
Location: 74576 - 75649 (+)
Gene ID: ShaoY_2019_ERR3406288_bin.2_k141_13884_76
Type: pfam
Location: 75736 - 76665 (+)
Gene ID: ShaoY_2019_ERR3406288_bin.2_k141_13884_77
Type: CAZyme
Location: 76684 - 77556 (+)
Gene ID: ShaoY_2019_ERR3406288_bin.2_k141_13884_78
Type: pfam
Location: 77598 - 78929 (+)
Gene ID: ShaoY_2019_ERR3406288_bin.2_k141_13884_79
Type: CAZyme
Location: 78883 - 79662 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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