dbCAN Logo

Cluster: ShaoY_2019_ERR3406288_bin.2_CGC2

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC ShaoY_2019_ERR3406288_bin.2_k141_3346 ShaoY_2019_ERR3406288_bin.2_k141_3346_13 12974 14596 + 2.A.58.2.2
pfam ShaoY_2019_ERR3406288_bin.2_k141_3346 ShaoY_2019_ERR3406288_bin.2_k141_3346_14 14793 16139 + PGI
TC ShaoY_2019_ERR3406288_bin.2_k141_3346 ShaoY_2019_ERR3406288_bin.2_k141_3346_15 16347 17444 + 9.B.160.1.10
pfam ShaoY_2019_ERR3406288_bin.2_k141_3346 ShaoY_2019_ERR3406288_bin.2_k141_3346_16 17590 18432 + TylF | Methyltransf_24
TC ShaoY_2019_ERR3406288_bin.2_k141_3346 ShaoY_2019_ERR3406288_bin.2_k141_3346_17 18520 20430 - 9.A.8.1.9
STP ShaoY_2019_ERR3406288_bin.2_k141_3346 ShaoY_2019_ERR3406288_bin.2_k141_3346_18 20431 20667 - FeoA
TC ShaoY_2019_ERR3406288_bin.2_k141_3346 ShaoY_2019_ERR3406288_bin.2_k141_3346_19 20853 21380 + 2.A.87.3.1
pfam ShaoY_2019_ERR3406288_bin.2_k141_3346 ShaoY_2019_ERR3406288_bin.2_k141_3346_20 21377 21580 + SpoOE-like
TC ShaoY_2019_ERR3406288_bin.2_k141_3346 ShaoY_2019_ERR3406288_bin.2_k141_3346_21 21710 22555 + 1.A.23.3.1
TC ShaoY_2019_ERR3406288_bin.2_k141_3346 ShaoY_2019_ERR3406288_bin.2_k141_3346_22 22625 23296 + 9.B.20.1.4
peptidase ShaoY_2019_ERR3406288_bin.2_k141_3346 ShaoY_2019_ERR3406288_bin.2_k141_3346_23 23366 25144 + M03.UPB
STP ShaoY_2019_ERR3406288_bin.2_k141_3346 ShaoY_2019_ERR3406288_bin.2_k141_3346_24 25288 26118 + SBP_bac_1
TC ShaoY_2019_ERR3406288_bin.2_k141_3346 ShaoY_2019_ERR3406288_bin.2_k141_3346_25 26418 27782 + 2.A.40.2.1
STP ShaoY_2019_ERR3406288_bin.2_k141_3346 ShaoY_2019_ERR3406288_bin.2_k141_3346_26 27782 28354 + Pribosyltran
TC ShaoY_2019_ERR3406288_bin.2_k141_3346 ShaoY_2019_ERR3406288_bin.2_k141_3346_27 28647 29582 + 3.A.1.7.5
TC ShaoY_2019_ERR3406288_bin.2_k141_3346 ShaoY_2019_ERR3406288_bin.2_k141_3346_28 29584 30408 + 3.A.1.7.5
TC ShaoY_2019_ERR3406288_bin.2_k141_3346 ShaoY_2019_ERR3406288_bin.2_k141_3346_29 30421 31185 + 3.A.1.7.5
pfam ShaoY_2019_ERR3406288_bin.2_k141_3346 ShaoY_2019_ERR3406288_bin.2_k141_3346_30 31222 31872 + PhoU | PhoU
pfam ShaoY_2019_ERR3406288_bin.2_k141_3346 ShaoY_2019_ERR3406288_bin.2_k141_3346_31 31997 32866 + ArAE_1 | FUSC_2
CAZyme ShaoY_2019_ERR3406288_bin.2_k141_3346 ShaoY_2019_ERR3406288_bin.2_k141_3346_32 32940 33632 + CE4
Gene ID: ShaoY_2019_ERR3406288_bin.2_k141_3346_13
Type: TC
Location: 12974 - 14596 (+)
Gene ID: ShaoY_2019_ERR3406288_bin.2_k141_3346_14
Type: pfam
Location: 14793 - 16139 (+)
Gene ID: ShaoY_2019_ERR3406288_bin.2_k141_3346_15
Type: TC
Location: 16347 - 17444 (+)
Gene ID: ShaoY_2019_ERR3406288_bin.2_k141_3346_16
Type: pfam
Location: 17590 - 18432 (+)
Gene ID: ShaoY_2019_ERR3406288_bin.2_k141_3346_17
Type: TC
Location: 18520 - 20430 (-)
Gene ID: ShaoY_2019_ERR3406288_bin.2_k141_3346_18
Type: STP
Location: 20431 - 20667 (-)
Gene ID: ShaoY_2019_ERR3406288_bin.2_k141_3346_19
Type: TC
Location: 20853 - 21380 (+)
Gene ID: ShaoY_2019_ERR3406288_bin.2_k141_3346_20
Type: pfam
Location: 21377 - 21580 (+)
Gene ID: ShaoY_2019_ERR3406288_bin.2_k141_3346_21
Type: TC
Location: 21710 - 22555 (+)
Gene ID: ShaoY_2019_ERR3406288_bin.2_k141_3346_22
Type: TC
Location: 22625 - 23296 (+)
Gene ID: ShaoY_2019_ERR3406288_bin.2_k141_3346_23
Type: peptidase
Location: 23366 - 25144 (+)
Gene ID: ShaoY_2019_ERR3406288_bin.2_k141_3346_24
Type: STP
Location: 25288 - 26118 (+)
Gene ID: ShaoY_2019_ERR3406288_bin.2_k141_3346_25
Type: TC
Location: 26418 - 27782 (+)
Gene ID: ShaoY_2019_ERR3406288_bin.2_k141_3346_26
Type: STP
Location: 27782 - 28354 (+)
Gene ID: ShaoY_2019_ERR3406288_bin.2_k141_3346_27
Type: TC
Location: 28647 - 29582 (+)
Gene ID: ShaoY_2019_ERR3406288_bin.2_k141_3346_28
Type: TC
Location: 29584 - 30408 (+)
Gene ID: ShaoY_2019_ERR3406288_bin.2_k141_3346_29
Type: TC
Location: 30421 - 31185 (+)
Gene ID: ShaoY_2019_ERR3406288_bin.2_k141_3346_30
Type: pfam
Location: 31222 - 31872 (+)
Gene ID: ShaoY_2019_ERR3406288_bin.2_k141_3346_31
Type: pfam
Location: 31997 - 32866 (+)
Gene ID: ShaoY_2019_ERR3406288_bin.2_k141_3346_32
Type: CAZyme
Location: 32940 - 33632 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

Loading chart...

Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
ShaoY_2019_ERR3406288_bin.2_k141_3346_26 vegan > omnivore 3.18391 0.00782

🧭 Explore Read Mapping of CGC

← Back to Cluster List