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Cluster: ShaoY_2019_ERR3406288_bin.2_CGC18

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme ShaoY_2019_ERR3406288_bin.2_k141_13149 ShaoY_2019_ERR3406288_bin.2_k141_13149_154 162095 163435 + GH25
NULL(UNKNOWN) ShaoY_2019_ERR3406288_bin.2_k141_13149 ShaoY_2019_ERR3406288_bin.2_k141_13149_155 163510 164235 - NULL(UNKNOWN)
[View Structural Homologs]
TF ShaoY_2019_ERR3406288_bin.2_k141_13149 ShaoY_2019_ERR3406288_bin.2_k141_13149_156 164554 165021 + MarR
TC ShaoY_2019_ERR3406288_bin.2_k141_13149 ShaoY_2019_ERR3406288_bin.2_k141_13149_157 165049 167331 + 3.A.1.135.6
TC ShaoY_2019_ERR3406288_bin.2_k141_13149 ShaoY_2019_ERR3406288_bin.2_k141_13149_158 167324 169183 + 3.A.1.135.6
TC ShaoY_2019_ERR3406288_bin.2_k141_13149 ShaoY_2019_ERR3406288_bin.2_k141_13149_159 169336 170166 + 8.A.5.1.4
Gene ID: ShaoY_2019_ERR3406288_bin.2_k141_13149_154
Type: CAZyme
Location: 162095 - 163435 (+)
Gene ID: ShaoY_2019_ERR3406288_bin.2_k141_13149_155
Type:
Location: 163510 - 164235 (-)
Gene ID: ShaoY_2019_ERR3406288_bin.2_k141_13149_156
Type: TF
Location: 164554 - 165021 (+)
Gene ID: ShaoY_2019_ERR3406288_bin.2_k141_13149_157
Type: TC
Location: 165049 - 167331 (+)
Gene ID: ShaoY_2019_ERR3406288_bin.2_k141_13149_158
Type: TC
Location: 167324 - 169183 (+)
Gene ID: ShaoY_2019_ERR3406288_bin.2_k141_13149_159
Type: TC
Location: 169336 - 170166 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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