Cluster: ShaoY_2019_ERR3406288_bin.12_CGC3
🧬 Cluster Details
- Gene Count: 8
- CAZyme Count: 1
- Substrate:
- Genome ID: ShaoY_2019_ERR3406288_bin.12
- Continent: Europe
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | ShaoY_2019_ERR3406288_bin.12_k141_2115 | ShaoY_2019_ERR3406288_bin.12_k141_2115_28 | 36308 | 37984 | + | 3.A.1.5.35 |
| TC | ShaoY_2019_ERR3406288_bin.12_k141_2115 | ShaoY_2019_ERR3406288_bin.12_k141_2115_29 | 38141 | 39178 | + | 3.A.1.5.37 |
| TC | ShaoY_2019_ERR3406288_bin.12_k141_2115 | ShaoY_2019_ERR3406288_bin.12_k141_2115_30 | 39193 | 40128 | + | 3.A.1.5.11 |
| TC | ShaoY_2019_ERR3406288_bin.12_k141_2115 | ShaoY_2019_ERR3406288_bin.12_k141_2115_31 | 40131 | 41222 | + | 3.A.1.5.34 |
| TC | ShaoY_2019_ERR3406288_bin.12_k141_2115 | ShaoY_2019_ERR3406288_bin.12_k141_2115_32 | 41223 | 42251 | + | 3.A.1.5.36 |
| STP | ShaoY_2019_ERR3406288_bin.12_k141_2115 | ShaoY_2019_ERR3406288_bin.12_k141_2115_33 | 42994 | 45339 | + | GAF | SpoIIE |
| STP | ShaoY_2019_ERR3406288_bin.12_k141_2115 | ShaoY_2019_ERR3406288_bin.12_k141_2115_34 | 45421 | 46167 | + | STAS |
| CAZyme | ShaoY_2019_ERR3406288_bin.12_k141_2115 | ShaoY_2019_ERR3406288_bin.12_k141_2115_35 | 46913 | 48646 | + | GH13_30 |
Gene ID: ShaoY_2019_ERR3406288_bin.12_k141_2115_28
Type: TC
Location: 36308 - 37984 (+)
Type: TC
Location: 36308 - 37984 (+)
Gene ID: ShaoY_2019_ERR3406288_bin.12_k141_2115_29
Type: TC
Location: 38141 - 39178 (+)
Type: TC
Location: 38141 - 39178 (+)
Gene ID: ShaoY_2019_ERR3406288_bin.12_k141_2115_30
Type: TC
Location: 39193 - 40128 (+)
Type: TC
Location: 39193 - 40128 (+)
Gene ID: ShaoY_2019_ERR3406288_bin.12_k141_2115_31
Type: TC
Location: 40131 - 41222 (+)
Type: TC
Location: 40131 - 41222 (+)
Gene ID: ShaoY_2019_ERR3406288_bin.12_k141_2115_32
Type: TC
Location: 41223 - 42251 (+)
Type: TC
Location: 41223 - 42251 (+)
Gene ID: ShaoY_2019_ERR3406288_bin.12_k141_2115_33
Type: STP
Location: 42994 - 45339 (+)
Type: STP
Location: 42994 - 45339 (+)
Gene ID: ShaoY_2019_ERR3406288_bin.12_k141_2115_34
Type: STP
Location: 45421 - 46167 (+)
Type: STP
Location: 45421 - 46167 (+)
Gene ID: ShaoY_2019_ERR3406288_bin.12_k141_2115_35
Type: CAZyme
Location: 46913 - 48646 (+)
Type: CAZyme
Location: 46913 - 48646 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Species
Collinsella sp900552735
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.