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Cluster: ShaoY_2019_ERR3406288_bin.12_CGC2

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC ShaoY_2019_ERR3406288_bin.12_k141_2115 ShaoY_2019_ERR3406288_bin.12_k141_2115_10 13721 16024 + 2.A.66.4.4
pfam ShaoY_2019_ERR3406288_bin.12_k141_2115 ShaoY_2019_ERR3406288_bin.12_k141_2115_11 16031 17971 + GIY-YIG | UVR | UvrC_RNaseH_dom | HHH_2 | HHH_5 | UvrC_RNaseH
TC ShaoY_2019_ERR3406288_bin.12_k141_2115 ShaoY_2019_ERR3406288_bin.12_k141_2115_12 18337 19950 + 3.A.1.5.27
TC ShaoY_2019_ERR3406288_bin.12_k141_2115 ShaoY_2019_ERR3406288_bin.12_k141_2115_13 20108 21064 + 3.A.1.5.38
TC ShaoY_2019_ERR3406288_bin.12_k141_2115 ShaoY_2019_ERR3406288_bin.12_k141_2115_14 21068 23083 + 3.A.1.5.25
TC ShaoY_2019_ERR3406288_bin.12_k141_2115 ShaoY_2019_ERR3406288_bin.12_k141_2115_15 23084 23911 + 3.A.1.5.27
CAZyme ShaoY_2019_ERR3406288_bin.12_k141_2115 ShaoY_2019_ERR3406288_bin.12_k141_2115_16 24043 24969 + CE7
Gene ID: ShaoY_2019_ERR3406288_bin.12_k141_2115_10
Type: TC
Location: 13721 - 16024 (+)
Gene ID: ShaoY_2019_ERR3406288_bin.12_k141_2115_11
Type: pfam
Location: 16031 - 17971 (+)
Gene ID: ShaoY_2019_ERR3406288_bin.12_k141_2115_12
Type: TC
Location: 18337 - 19950 (+)
Gene ID: ShaoY_2019_ERR3406288_bin.12_k141_2115_13
Type: TC
Location: 20108 - 21064 (+)
Gene ID: ShaoY_2019_ERR3406288_bin.12_k141_2115_14
Type: TC
Location: 21068 - 23083 (+)
Gene ID: ShaoY_2019_ERR3406288_bin.12_k141_2115_15
Type: TC
Location: 23084 - 23911 (+)
Gene ID: ShaoY_2019_ERR3406288_bin.12_k141_2115_16
Type: CAZyme
Location: 24043 - 24969 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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