Cluster: ShaoY_2019_ERR3406288_bin.12_CGC13
🧬 Cluster Details
- Gene Count: 8
- CAZyme Count: 1
- Substrate:
- Genome ID: ShaoY_2019_ERR3406288_bin.12
- Continent: Europe
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | ShaoY_2019_ERR3406288_bin.12_k141_5560 | ShaoY_2019_ERR3406288_bin.12_k141_5560_33 | 37968 | 39137 | - | CE9 |
| STP | ShaoY_2019_ERR3406288_bin.12_k141_5560 | ShaoY_2019_ERR3406288_bin.12_k141_5560_34 | 39256 | 40422 | - | SIS | SIS |
| TF | ShaoY_2019_ERR3406288_bin.12_k141_5560 | ShaoY_2019_ERR3406288_bin.12_k141_5560_35 | 40537 | 41268 | - | GntR |
| TC | ShaoY_2019_ERR3406288_bin.12_k141_5560 | ShaoY_2019_ERR3406288_bin.12_k141_5560_36 | 41454 | 42536 | - | 4.A.6.1.4 |
| TC | ShaoY_2019_ERR3406288_bin.12_k141_5560 | ShaoY_2019_ERR3406288_bin.12_k141_5560_37 | 42526 | 43326 | - | 4.A.6.1.4 |
| TC | ShaoY_2019_ERR3406288_bin.12_k141_5560 | ShaoY_2019_ERR3406288_bin.12_k141_5560_38 | 43417 | 43899 | - | 4.A.6.1.4 |
| pfam | ShaoY_2019_ERR3406288_bin.12_k141_5560 | ShaoY_2019_ERR3406288_bin.12_k141_5560_39 | 43936 | 44217 | - | YajC |
| TC | ShaoY_2019_ERR3406288_bin.12_k141_5560 | ShaoY_2019_ERR3406288_bin.12_k141_5560_40 | 44217 | 44660 | - | 4.A.6.1.16 |
Gene ID: ShaoY_2019_ERR3406288_bin.12_k141_5560_33
Type: CAZyme
Location: 37968 - 39137 (-)
Type: CAZyme
Location: 37968 - 39137 (-)
Gene ID: ShaoY_2019_ERR3406288_bin.12_k141_5560_34
Type: STP
Location: 39256 - 40422 (-)
Type: STP
Location: 39256 - 40422 (-)
Gene ID: ShaoY_2019_ERR3406288_bin.12_k141_5560_35
Type: TF
Location: 40537 - 41268 (-)
Type: TF
Location: 40537 - 41268 (-)
Gene ID: ShaoY_2019_ERR3406288_bin.12_k141_5560_36
Type: TC
Location: 41454 - 42536 (-)
Type: TC
Location: 41454 - 42536 (-)
Gene ID: ShaoY_2019_ERR3406288_bin.12_k141_5560_37
Type: TC
Location: 42526 - 43326 (-)
Type: TC
Location: 42526 - 43326 (-)
Gene ID: ShaoY_2019_ERR3406288_bin.12_k141_5560_38
Type: TC
Location: 43417 - 43899 (-)
Type: TC
Location: 43417 - 43899 (-)
Gene ID: ShaoY_2019_ERR3406288_bin.12_k141_5560_39
Type: pfam
Location: 43936 - 44217 (-)
Type: pfam
Location: 43936 - 44217 (-)
Gene ID: ShaoY_2019_ERR3406288_bin.12_k141_5560_40
Type: TC
Location: 44217 - 44660 (-)
Type: TC
Location: 44217 - 44660 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Species
Collinsella sp900552735
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.