Cluster: ShaoY_2019_ERR3406288_bin.12_CGC12
🧬 Cluster Details
- Gene Count: 10
- CAZyme Count: 2
- Substrate:
- Genome ID: ShaoY_2019_ERR3406288_bin.12
- Continent: Europe
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | ShaoY_2019_ERR3406288_bin.12_k141_5560 | ShaoY_2019_ERR3406288_bin.12_k141_5560_18 | 20664 | 21002 | - | 4.A.3.1.2 |
| TF | ShaoY_2019_ERR3406288_bin.12_k141_5560 | ShaoY_2019_ERR3406288_bin.12_k141_5560_19 | 21217 | 22221 | - | LacI |
| TC | ShaoY_2019_ERR3406288_bin.12_k141_5560 | ShaoY_2019_ERR3406288_bin.12_k141_5560_20 | 22579 | 24354 | + | 4.A.3.1.1 |
| CAZyme | ShaoY_2019_ERR3406288_bin.12_k141_5560 | ShaoY_2019_ERR3406288_bin.12_k141_5560_21 | 24421 | 25860 | + | GH1 |
| TF | ShaoY_2019_ERR3406288_bin.12_k141_5560 | ShaoY_2019_ERR3406288_bin.12_k141_5560_22 | 26208 | 27218 | - | LacI |
| TC | ShaoY_2019_ERR3406288_bin.12_k141_5560 | ShaoY_2019_ERR3406288_bin.12_k141_5560_23 | 27494 | 29272 | + | 4.A.3.1.1 |
| CAZyme | ShaoY_2019_ERR3406288_bin.12_k141_5560 | ShaoY_2019_ERR3406288_bin.12_k141_5560_24 | 29348 | 30769 | + | GH1 |
| TF | ShaoY_2019_ERR3406288_bin.12_k141_5560 | ShaoY_2019_ERR3406288_bin.12_k141_5560_25 | 31277 | 32041 | - | HTH_DeoR |
| sulfatase | ShaoY_2019_ERR3406288_bin.12_k141_5560 | ShaoY_2019_ERR3406288_bin.12_k141_5560_26 | 32248 | 33300 | + | S1_4 |
| TC | ShaoY_2019_ERR3406288_bin.12_k141_5560 | ShaoY_2019_ERR3406288_bin.12_k141_5560_27 | 33626 | 34108 | - | 4.A.6.1.3 |
Gene ID: ShaoY_2019_ERR3406288_bin.12_k141_5560_18
Type: TC
Location: 20664 - 21002 (-)
Type: TC
Location: 20664 - 21002 (-)
Gene ID: ShaoY_2019_ERR3406288_bin.12_k141_5560_19
Type: TF
Location: 21217 - 22221 (-)
Type: TF
Location: 21217 - 22221 (-)
Gene ID: ShaoY_2019_ERR3406288_bin.12_k141_5560_20
Type: TC
Location: 22579 - 24354 (+)
Type: TC
Location: 22579 - 24354 (+)
Gene ID: ShaoY_2019_ERR3406288_bin.12_k141_5560_21
Type: CAZyme
Location: 24421 - 25860 (+)
Type: CAZyme
Location: 24421 - 25860 (+)
Gene ID: ShaoY_2019_ERR3406288_bin.12_k141_5560_22
Type: TF
Location: 26208 - 27218 (-)
Type: TF
Location: 26208 - 27218 (-)
Gene ID: ShaoY_2019_ERR3406288_bin.12_k141_5560_23
Type: TC
Location: 27494 - 29272 (+)
Type: TC
Location: 27494 - 29272 (+)
Gene ID: ShaoY_2019_ERR3406288_bin.12_k141_5560_24
Type: CAZyme
Location: 29348 - 30769 (+)
Type: CAZyme
Location: 29348 - 30769 (+)
Gene ID: ShaoY_2019_ERR3406288_bin.12_k141_5560_25
Type: TF
Location: 31277 - 32041 (-)
Type: TF
Location: 31277 - 32041 (-)
Gene ID: ShaoY_2019_ERR3406288_bin.12_k141_5560_26
Type: sulfatase
Location: 32248 - 33300 (+)
Type: sulfatase
Location: 32248 - 33300 (+)
Gene ID: ShaoY_2019_ERR3406288_bin.12_k141_5560_27
Type: TC
Location: 33626 - 34108 (-)
Type: TC
Location: 33626 - 34108 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Species
Collinsella sp900552735
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.