Cluster: ShaoY_2019_ERR3406288_bin.12_CGC11
🧬 Cluster Details
- Gene Count: 8
- CAZyme Count: 2
- Substrate:
- Genome ID: ShaoY_2019_ERR3406288_bin.12
- Continent: Europe
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | ShaoY_2019_ERR3406288_bin.12_k141_5381 | ShaoY_2019_ERR3406288_bin.12_k141_5381_9 | 7816 | 9321 | + | GH77 |
| CAZyme | ShaoY_2019_ERR3406288_bin.12_k141_5381 | ShaoY_2019_ERR3406288_bin.12_k141_5381_10 | 9451 | 11718 | + | GT35 |
| TC | ShaoY_2019_ERR3406288_bin.12_k141_5381 | ShaoY_2019_ERR3406288_bin.12_k141_5381_11 | 12175 | 13374 | - | 3.A.1.1.22 |
| TC | ShaoY_2019_ERR3406288_bin.12_k141_5381 | ShaoY_2019_ERR3406288_bin.12_k141_5381_12 | 13443 | 14282 | - | 3.A.1.1.45 |
| TC | ShaoY_2019_ERR3406288_bin.12_k141_5381 | ShaoY_2019_ERR3406288_bin.12_k141_5381_13 | 14282 | 15136 | - | 3.A.1.1.45 |
| TC | ShaoY_2019_ERR3406288_bin.12_k141_5381 | ShaoY_2019_ERR3406288_bin.12_k141_5381_14 | 15224 | 16540 | - | 3.A.1.1.45 |
| TF | ShaoY_2019_ERR3406288_bin.12_k141_5381 | ShaoY_2019_ERR3406288_bin.12_k141_5381_15 | 16847 | 17566 | - | GntR |
| TC | ShaoY_2019_ERR3406288_bin.12_k141_5381 | ShaoY_2019_ERR3406288_bin.12_k141_5381_16 | 17796 | 20246 | + | 4.A.1.1.8 |
Gene ID: ShaoY_2019_ERR3406288_bin.12_k141_5381_9
Type: CAZyme
Location: 7816 - 9321 (+)
Type: CAZyme
Location: 7816 - 9321 (+)
Gene ID: ShaoY_2019_ERR3406288_bin.12_k141_5381_10
Type: CAZyme
Location: 9451 - 11718 (+)
Type: CAZyme
Location: 9451 - 11718 (+)
Gene ID: ShaoY_2019_ERR3406288_bin.12_k141_5381_11
Type: TC
Location: 12175 - 13374 (-)
Type: TC
Location: 12175 - 13374 (-)
Gene ID: ShaoY_2019_ERR3406288_bin.12_k141_5381_12
Type: TC
Location: 13443 - 14282 (-)
Type: TC
Location: 13443 - 14282 (-)
Gene ID: ShaoY_2019_ERR3406288_bin.12_k141_5381_13
Type: TC
Location: 14282 - 15136 (-)
Type: TC
Location: 14282 - 15136 (-)
Gene ID: ShaoY_2019_ERR3406288_bin.12_k141_5381_14
Type: TC
Location: 15224 - 16540 (-)
Type: TC
Location: 15224 - 16540 (-)
Gene ID: ShaoY_2019_ERR3406288_bin.12_k141_5381_15
Type: TF
Location: 16847 - 17566 (-)
Type: TF
Location: 16847 - 17566 (-)
Gene ID: ShaoY_2019_ERR3406288_bin.12_k141_5381_16
Type: TC
Location: 17796 - 20246 (+)
Type: TC
Location: 17796 - 20246 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Species
Collinsella sp900552735
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.