Cluster: ShaoY_2019_ERR3406288_bin.12_CGC1
🧬 Cluster Details
- Gene Count: 10
- CAZyme Count: 1
- Substrate:
- Genome ID: ShaoY_2019_ERR3406288_bin.12
- Continent: Europe
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | ShaoY_2019_ERR3406288_bin.12_k141_1522 | ShaoY_2019_ERR3406288_bin.12_k141_1522_91 | 94116 | 95492 | - | GH13_20 |
| TC | ShaoY_2019_ERR3406288_bin.12_k141_1522 | ShaoY_2019_ERR3406288_bin.12_k141_1522_92 | 95647 | 96843 | - | 2.A.1.2.18 |
| TC | ShaoY_2019_ERR3406288_bin.12_k141_1522 | ShaoY_2019_ERR3406288_bin.12_k141_1522_93 | 96965 | 99325 | - | 9.A.8.1.6 |
| peptidase | ShaoY_2019_ERR3406288_bin.12_k141_1522 | ShaoY_2019_ERR3406288_bin.12_k141_1522_94 | 99510 | 100412 | - | S09.UPW |
| TC | ShaoY_2019_ERR3406288_bin.12_k141_1522 | ShaoY_2019_ERR3406288_bin.12_k141_1522_95 | 100657 | 101220 | + | 4.A.1.2.6 |
| pfam | ShaoY_2019_ERR3406288_bin.12_k141_1522 | ShaoY_2019_ERR3406288_bin.12_k141_1522_96 | 101402 | 102805 | + | tRNA-synt_2 | tRNA_anti-codon |
| NULL(UNKNOWN) | ShaoY_2019_ERR3406288_bin.12_k141_1522 | ShaoY_2019_ERR3406288_bin.12_k141_1522_97 | 103064 | 103849 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | ShaoY_2019_ERR3406288_bin.12_k141_1522 | ShaoY_2019_ERR3406288_bin.12_k141_1522_98 | 104009 | 104989 | + | 3.A.1.34.1 |
| TC | ShaoY_2019_ERR3406288_bin.12_k141_1522 | ShaoY_2019_ERR3406288_bin.12_k141_1522_99 | 105194 | 106117 | + | 3.A.1.34.1 |
| TC | ShaoY_2019_ERR3406288_bin.12_k141_1522 | ShaoY_2019_ERR3406288_bin.12_k141_1522_100 | 106110 | 106904 | + | 3.A.1.34.1 |
Gene ID: ShaoY_2019_ERR3406288_bin.12_k141_1522_91
Type: CAZyme
Location: 94116 - 95492 (-)
Type: CAZyme
Location: 94116 - 95492 (-)
Gene ID: ShaoY_2019_ERR3406288_bin.12_k141_1522_92
Type: TC
Location: 95647 - 96843 (-)
Type: TC
Location: 95647 - 96843 (-)
Gene ID: ShaoY_2019_ERR3406288_bin.12_k141_1522_93
Type: TC
Location: 96965 - 99325 (-)
Type: TC
Location: 96965 - 99325 (-)
Gene ID: ShaoY_2019_ERR3406288_bin.12_k141_1522_94
Type: peptidase
Location: 99510 - 100412 (-)
Type: peptidase
Location: 99510 - 100412 (-)
Gene ID: ShaoY_2019_ERR3406288_bin.12_k141_1522_95
Type: TC
Location: 100657 - 101220 (+)
Type: TC
Location: 100657 - 101220 (+)
Gene ID: ShaoY_2019_ERR3406288_bin.12_k141_1522_96
Type: pfam
Location: 101402 - 102805 (+)
Type: pfam
Location: 101402 - 102805 (+)
Gene ID: ShaoY_2019_ERR3406288_bin.12_k141_1522_97
Type:
Location: 103064 - 103849 (+)
Type:
Location: 103064 - 103849 (+)
Gene ID: ShaoY_2019_ERR3406288_bin.12_k141_1522_98
Type: TC
Location: 104009 - 104989 (+)
Type: TC
Location: 104009 - 104989 (+)
Gene ID: ShaoY_2019_ERR3406288_bin.12_k141_1522_99
Type: TC
Location: 105194 - 106117 (+)
Type: TC
Location: 105194 - 106117 (+)
Gene ID: ShaoY_2019_ERR3406288_bin.12_k141_1522_100
Type: TC
Location: 106110 - 106904 (+)
Type: TC
Location: 106110 - 106904 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Species
Collinsella sp900552735
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
Loading chart...
No differentially abundant genes found in the 2019 study.