Cluster: ShaoY_2019_ERR3406283_bin.5_CGC5
🧬 Cluster Details
- Gene Count: 8
- CAZyme Count: 1
- Substrate:
- Genome ID: ShaoY_2019_ERR3406283_bin.5
- Continent: Europe
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | ShaoY_2019_ERR3406283_bin.5_k141_8789 | ShaoY_2019_ERR3406283_bin.5_k141_8789_1 | 315 | 1166 | + | CE4 |
| pfam | ShaoY_2019_ERR3406283_bin.5_k141_8789 | ShaoY_2019_ERR3406283_bin.5_k141_8789_2 | 1175 | 1669 | + | MoCF_biosynth |
| pfam | ShaoY_2019_ERR3406283_bin.5_k141_8789 | ShaoY_2019_ERR3406283_bin.5_k141_8789_3 | 1748 | 2377 | + | PhoU_div |
| TC | ShaoY_2019_ERR3406283_bin.5_k141_8789 | ShaoY_2019_ERR3406283_bin.5_k141_8789_4 | 2370 | 3377 | + | 2.A.20.1.5 |
| TF | ShaoY_2019_ERR3406283_bin.5_k141_8789 | ShaoY_2019_ERR3406283_bin.5_k141_8789_5 | 3540 | 3992 | + | Rrf2 |
| TC | ShaoY_2019_ERR3406283_bin.5_k141_8789 | ShaoY_2019_ERR3406283_bin.5_k141_8789_6 | 4052 | 5440 | + | 3.D.4.3.2 |
| TC | ShaoY_2019_ERR3406283_bin.5_k141_8789 | ShaoY_2019_ERR3406283_bin.5_k141_8789_7 | 5431 | 6450 | + | 3.D.4.3.2 |
| TC | ShaoY_2019_ERR3406283_bin.5_k141_8789 | ShaoY_2019_ERR3406283_bin.5_k141_8789_8 | 6575 | 10114 | + | 3.A.1.129.1 |
Gene ID: ShaoY_2019_ERR3406283_bin.5_k141_8789_1
Type: CAZyme
Location: 315 - 1166 (+)
Type: CAZyme
Location: 315 - 1166 (+)
Gene ID: ShaoY_2019_ERR3406283_bin.5_k141_8789_2
Type: pfam
Location: 1175 - 1669 (+)
Type: pfam
Location: 1175 - 1669 (+)
Gene ID: ShaoY_2019_ERR3406283_bin.5_k141_8789_3
Type: pfam
Location: 1748 - 2377 (+)
Type: pfam
Location: 1748 - 2377 (+)
Gene ID: ShaoY_2019_ERR3406283_bin.5_k141_8789_4
Type: TC
Location: 2370 - 3377 (+)
Type: TC
Location: 2370 - 3377 (+)
Gene ID: ShaoY_2019_ERR3406283_bin.5_k141_8789_5
Type: TF
Location: 3540 - 3992 (+)
Type: TF
Location: 3540 - 3992 (+)
Gene ID: ShaoY_2019_ERR3406283_bin.5_k141_8789_6
Type: TC
Location: 4052 - 5440 (+)
Type: TC
Location: 4052 - 5440 (+)
Gene ID: ShaoY_2019_ERR3406283_bin.5_k141_8789_7
Type: TC
Location: 5431 - 6450 (+)
Type: TC
Location: 5431 - 6450 (+)
Gene ID: ShaoY_2019_ERR3406283_bin.5_k141_8789_8
Type: TC
Location: 6575 - 10114 (+)
Type: TC
Location: 6575 - 10114 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_C
Class
Negativicutes
Order
Veillonellales
Family
Veillonellaceae
Genus
Veillonella
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.